C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RUN domain containing 3A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108309 RUNDC3A 9606 + 17:44308413-44318671 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225441 RUNDC3A-002 44308596-44317870 protein_coding
  ENST00000426726 RUNDC3A-001 44308559-44318671 protein_coding
  ENST00000587483 RUNDC3A-004 44310704-44318669 retained_intron
  ENST00000588564 RUNDC3A-007 44316555-44318670 retained_intron
  ENST00000590834 RUNDC3A-003 44308413-44318670 retained_intron
  ENST00000590941 RUNDC3A-005 44308583-44317726 protein_coding
  ENST00000593079 RUNDC3A-006 44314758-44315713 retained_intron
  ENST00000612735 RUNDC3A-201 44308833-44316740 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225441ENST00000426726ENST00000587483ENST00000588564ENST00000590834ENST00000590941ENST00000593079ENST00000612735
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225441 N/A N/A N/A 27.234±5.05 0.249±0.00 N/A 0.020±0.00 N/A N/A N/A N/A 0.237±0.00 1.160±0.00 N/A
ENST00000426726 N/A N/A N/A 33.567±0.00 N/A 1.052±0.00 N/A N/A N/A N/A N/A 0.706±0.04 0.518±0.00 3.392±1.83
ENST00000587483 0.062±0.00 0.191±0.00 0.039±0.00 N/A N/A N/A 0.033±0.00 N/A 0.026±0.01 N/A N/A 0.117±0.03 N/A 0.786±0.00
ENST00000588564 N/A N/A N/A N/A N/A 1.794±0.00 N/A N/A N/A 1.131±0.00 N/A 1.490±0.00 1.876±0.09 N/A
ENST00000590834 N/A N/A N/A N/A 0.231±0.00 N/A 0.117±0.00 0.367±0.00 N/A N/A N/A N/A N/A 1.196±0.00
ENST00000590941 N/A N/A N/A 28.733±0.00 0.185±0.00 N/A 0.087±0.00 0.354±0.00 N/A 0.451±0.00 N/A 1.049±1.06 0.944±0.36 N/A
ENST00000593079 N/A N/A 0.455±0.00 N/A N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A
ENST00000612735 N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A 0.177±0.00 N/A N/A 2.440±1.88 0.801±0.35 6.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005JA CIL_0005JA_0001 CGP 17:44248385-44318671
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 TAS small GTPase regulator activity
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0007264 TAS small GTPase mediated signal transduction
GO:0030250 IEA guanylate cyclase activator activity
GO:0030828 IEA positive regulation of cGMP biosynthetic process
GO:0031284 IEA positive regulation of guanylate cyclase activity
GO:0051428 IEA peptide hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002546 rundc3ab RUN domain containing 3Ab protein_coding Danio_rerio
ENSDARG00000007245 RUNDC3A (2 of 2) RUN domain containing 3A protein_coding Danio_rerio
ENSMUSG00000006575 Rundc3a RUN domain containing 3A protein_coding Mus_musculus

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