C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN domain containing 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587483 RUNDC3A-004 ENSG00000108309 9606 + 17:44310704-44318669 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderHeartLiverOvaryTestisENST00000587483
Transcript ID Adipose Adrenal Bladder Heart Liver Ovary Testis
ENST00000587483 0.062±0.00 0.191±0.00 0.039±0.00 0.033±0.00 0.026±0.01 0.117±0.03 0.786±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005JA CIL_0005JA_0001 CGP 17:44248385-44318671
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006750 Rundc3a-001 protein_coding Mus_musculus 0 1249
ENSMUST00000150982 Rundc3a-008 processed_transcript Mus_musculus 0 1243
ENSMUST00000142157 Rundc3a-007 processed_transcript Mus_musculus 0 1013
ENSMUST00000107103 Rundc3a-005 protein_coding Mus_musculus 0 950
ENSMUST00000107102 Rundc3a-004 protein_coding Mus_musculus 0 950
ENSMUST00000146330 Rundc3a-002 retained_intron Mus_musculus 0 808
ENSMUST00000107105 Rundc3a-003 protein_coding Mus_musculus 0 697
ENSMUST00000131219 Rundc3a-009 processed_transcript Mus_musculus 0 383
ENSMUST00000132876 Rundc3a-010 processed_transcript Mus_musculus 0 350
ENSMUST00000128331 Rundc3a-006 processed_transcript Mus_musculus 0 267
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000007 71
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000005 58

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