C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RUN domain containing 3A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006575 Rundc3a 10090 + 11:102393403-102402555 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006750 Rundc3a-001 102393403-102402555 protein_coding
  ENSMUST00000107102 Rundc3a-004 102393403-102401754 protein_coding
  ENSMUST00000107103 Rundc3a-005 102393403-102401754 protein_coding
  ENSMUST00000107105 Rundc3a-003 102393403-102401754 protein_coding
  ENSMUST00000128331 Rundc3a-006 102398119-102399779 processed_transcript
  ENSMUST00000131219 Rundc3a-009 102399756-102402152 processed_transcript
  ENSMUST00000132876 Rundc3a-010 102399858-102400785 processed_transcript
  ENSMUST00000142157 Rundc3a-007 102399564-102402226 processed_transcript
  ENSMUST00000146330 Rundc3a-002 102397864-102402555 retained_intron
  ENSMUST00000150982 Rundc3a-008 102399167-102402229 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006750ENSMUST00000107102ENSMUST00000107103ENSMUST00000107105ENSMUST00000128331ENSMUST00000132876ENSMUST00000142157ENSMUST00000146330ENSMUST00000150982
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006750 0.282±0.09 6.666±2.47 0.777±0.10 61.799±5.82 0.537±0.18 2.319±0.81 0.065±0.00 1.668±0.63 0.694±0.40 0.513±0.06 0.111±0.04 1.139±0.79 0.286±0.12 2.910±0.51
ENSMUST00000107102 N/A N/A N/A 37.208±0.00 N/A N/A N/A N/A N/A N/A N/A 0.324±0.00 N/A N/A
ENSMUST00000107103 N/A N/A N/A 21.765±0.00 N/A N/A N/A N/A N/A N/A N/A 0.547±0.00 0.130±0.00 N/A
ENSMUST00000107105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENSMUST00000128331 N/A N/A N/A 121.659±0.00 N/A N/A N/A N/A N/A N/A 0.146±0.00 0.637±0.00 N/A N/A
ENSMUST00000132876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A 15.277±0.00
ENSMUST00000142157 N/A 8.867±2.57 N/A N/A N/A 2.503±0.82 N/A N/A N/A N/A 0.145±0.07 1.000±0.00 0.415±0.00 6.351±0.00
ENSMUST00000146330 0.390±0.00 3.290±0.96 0.174±0.02 28.872±4.57 0.347±0.01 1.035±0.33 0.063±0.00 1.222±0.65 1.522±0.66 0.171±0.03 0.173±0.02 0.614±0.22 0.302±0.17 12.460±4.86
ENSMUST00000150982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.215±0.47 0.345±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005JA CIL_0005JA_0002 CGP 11:102348824-102402555
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0030250 IEA guanylate cyclase activator activity
GO:0030828 IEA positive regulation of cGMP biosynthetic process
GO:0031284 IEA positive regulation of guanylate cyclase activity
GO:0051428 IEA peptide hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002546 rundc3ab RUN domain containing 3Ab protein_coding Danio_rerio
ENSDARG00000007245 RUNDC3A (2 of 2) RUN domain containing 3A protein_coding Danio_rerio
ENSG00000108309 RUNDC3A RUN domain containing 3A protein_coding Homo_sapiens

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