C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN domain containing 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426726 RUNDC3A-001 ENSG00000108309 9606 + 17:44308559-44318671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaTestisENST00000426726
Transcript ID Brain Colon Ovary Placenta Testis
ENST00000426726 33.567±0.00 1.052±0.00 0.706±0.04 0.518±0.00 3.392±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005JA CIL_0005JA_0001 CGP 17:44248385-44318671
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 TAS small GTPase regulator activity
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0007264 TAS small GTPase mediated signal transduction
GO:0030250 IEA guanylate cyclase activator activity
GO:0030828 IEA positive regulation of cGMP biosynthetic process
GO:0031284 IEA positive regulation of guanylate cyclase activity
GO:0051428 IEA peptide hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006750 Rundc3a-001 protein_coding Mus_musculus 0 2137
ENSMUST00000107102 Rundc3a-004 protein_coding Mus_musculus 0 1838
ENSMUST00000107103 Rundc3a-005 protein_coding Mus_musculus 0 1757
ENSMUST00000107105 Rundc3a-003 protein_coding Mus_musculus 0 1711
ENSMUST00000150982 Rundc3a-008 processed_transcript Mus_musculus 0 1271
ENSMUST00000142157 Rundc3a-007 processed_transcript Mus_musculus 0 1046
ENSMUST00000146330 Rundc3a-002 retained_intron Mus_musculus 0 841
ENSMUST00000128331 Rundc3a-006 processed_transcript Mus_musculus 0 388
ENSMUST00000132876 Rundc3a-010 processed_transcript Mus_musculus 0 383
ENSMUST00000131219 Rundc3a-009 processed_transcript Mus_musculus 0 383

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