C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN domain containing 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590941 RUNDC3A-005 ENSG00000108309 9606 + 17:44308583-44317726 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLungOvaryPlacentaENST00000590941
Transcript ID Brain Breast Heart Kidney Lung Ovary Placenta
ENST00000590941 28.733±0.00 0.185±0.00 0.087±0.00 0.354±0.00 0.451±0.00 1.049±1.06 0.944±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005JA CIL_0005JA_0001 CGP 17:44248385-44318671
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 TAS small GTPase regulator activity
GO:0007264 TAS small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107103 Rundc3a-005 protein_coding Mus_musculus 0 1910
ENSMUST00000107102 Rundc3a-004 protein_coding Mus_musculus 0 1845
ENSMUST00000006750 Rundc3a-001 protein_coding Mus_musculus 0 1731
ENSMUST00000107105 Rundc3a-003 protein_coding Mus_musculus 0 1718
ENSMUST00000150982 Rundc3a-008 processed_transcript Mus_musculus 0 981
ENSMUST00000142157 Rundc3a-007 processed_transcript Mus_musculus 0 758
ENSMUST00000146330 Rundc3a-002 retained_intron Mus_musculus 0 736
ENSMUST00000128331 Rundc3a-006 processed_transcript Mus_musculus 0 388
ENSMUST00000132876 Rundc3a-010 processed_transcript Mus_musculus 0 383
ENSMUST00000131219 Rundc3a-009 processed_transcript Mus_musculus 0 267

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