C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN domain containing 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588564 RUNDC3A-007 ENSG00000108309 9606 + 17:44316555-44318670 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryPlacentaENST00000588564
Transcript ID Colon Lung Ovary Placenta
ENST00000588564 1.794±0.00 1.131±0.00 1.490±0.00 1.876±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005JA CIL_0005JA_0001 CGP 17:44248385-44318671
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146330 Rundc3a-002 retained_intron Mus_musculus 0 449
ENSMUST00000006750 Rundc3a-001 protein_coding Mus_musculus 0 449
ENSMUST00000150982 Rundc3a-008 processed_transcript Mus_musculus 0 438
ENSMUST00000142157 Rundc3a-007 processed_transcript Mus_musculus 0 436
ENSMUST00000131219 Rundc3a-009 processed_transcript Mus_musculus 0 383
ENSMUST00000107103 Rundc3a-005 protein_coding Mus_musculus 6e-34 148
ENSMUST00000107102 Rundc3a-004 protein_coding Mus_musculus 6e-34 148
ENSMUST00000107105 Rundc3a-003 protein_coding Mus_musculus 6e-34 148

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