C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005J9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108309-ENSG00000013306 CGP 9606 17:44308413-44324870
GeneTranscriptPositionBiotype
ENSG00000013306 (SLC25A39)
solute carrier family 25, member 39 		ENST00000225308 (SLC25A39-001) 44319625-44324870 protein_coding
ENST00000377095 (SLC25A39-006) 44319636-44324815 protein_coding
ENST00000537904 (SLC25A39-005) 44319870-44324827 protein_coding
ENST00000585523 (SLC25A39-009) 44322527-44324830 protein_coding
ENST00000585636 (SLC25A39-011) 44321477-44324827 protein_coding
ENST00000585695 (SLC25A39-003) 44320938-44324827 retained_intron
ENST00000586016 (SLC25A39-008) 44319673-44324782 protein_coding
ENST00000586633 (SLC25A39-010) 44322422-44324822 protein_coding
ENST00000588049 (SLC25A39-012) 44321434-44324818 protein_coding
ENST00000588315 (SLC25A39-002) 44320629-44324827 retained_intron
ENST00000588767 (SLC25A39-015) 44319995-44322445 protein_coding
ENST00000590194 (SLC25A39-007) 44319642-44324809 protein_coding
ENST00000591006 (SLC25A39-004) 44319627-44324147 retained_intron
ENST00000591151 (SLC25A39-013) 44322473-44324806 retained_intron
ENST00000592372 (SLC25A39-014) 44319691-44321147 retained_intron
ENST00000592857 (SLC25A39-017) 44322439-44324770 protein_coding
ENST00000593166 (SLC25A39-016) 44319820-44321524 nonsense_mediated_decay
ENSG00000108309 (RUNDC3A)
RUN domain containing 3A 		ENST00000225441 (RUNDC3A-002) 44308596-44317870 protein_coding
ENST00000426726 (RUNDC3A-001) 44308559-44318671 protein_coding
ENST00000587483 (RUNDC3A-004) 44310704-44318669 retained_intron
ENST00000588564 (RUNDC3A-007) 44316555-44318670 retained_intron
ENST00000590834 (RUNDC3A-003) 44308413-44318670 retained_intron
ENST00000590941 (RUNDC3A-005) 44308583-44317726 protein_coding
ENST00000593079 (RUNDC3A-006) 44314758-44315713 retained_intron
ENST00000612735 (RUNDC3A-201) 44308833-44316740 protein_coding
ENSG00000267750 (AC003102.3)
RUNDC3A antisense RNA 1 		ENST00000586388 (AC003102.3-002) 44302517-44308393 antisense
ENST00000588097 (AC003102.3-001) 44299574-44315315 antisense
CIL_0005J9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006575-ENSMUSG00000018677 CGP 10090 11:102393403-102407946
GeneTranscriptPositionBiotype
ENSMUSG00000006575 (Rundc3a)
RUN domain containing 3A 		ENSMUST00000006750 (Rundc3a-001) 102393403-102402555 protein_coding
ENSMUST00000107102 (Rundc3a-004) 102393403-102401754 protein_coding
ENSMUST00000107103 (Rundc3a-005) 102393403-102401754 protein_coding
ENSMUST00000107105 (Rundc3a-003) 102393403-102401754 protein_coding
ENSMUST00000128331 (Rundc3a-006) 102398119-102399779 processed_transcript
ENSMUST00000131219 (Rundc3a-009) 102399756-102402152 processed_transcript
ENSMUST00000132876 (Rundc3a-010) 102399858-102400785 processed_transcript
ENSMUST00000142157 (Rundc3a-007) 102399564-102402226 processed_transcript
ENSMUST00000146330 (Rundc3a-002) 102397864-102402555 retained_intron
ENSMUST00000150982 (Rundc3a-008) 102399167-102402229 processed_transcript
ENSMUSG00000018677 (Slc25a39)
solute carrier family 25, member 39 		ENSMUST00000018821 (Slc25a39-001) 102402985-102407544 protein_coding
ENSMUST00000107098 (Slc25a39-003) 102402985-102407489 protein_coding
ENSMUST00000123688 (Slc25a39-005) 102404389-102407463 retained_intron
ENSMUST00000124755 (Slc25a39-004) 102404854-102407946 protein_coding
ENSMUST00000128825 (Slc25a39-012) 102403042-102404493 protein_coding
ENSMUST00000130436 (Slc25a39-008) 102404609-102406955 protein_coding
ENSMUST00000134669 (Slc25a39-013) 102403791-102407508 nonsense_mediated_decay
ENSMUST00000141535 (Slc25a39-015) 102404018-102407456 retained_intron
ENSMUST00000142097 (Slc25a39-014) 102404062-102407487 nonsense_mediated_decay
ENSMUST00000147160 (Slc25a39-011) 102405023-102406808 processed_transcript
ENSMUST00000147860 (Slc25a39-009) 102405739-102406884 retained_intron
ENSMUST00000149777 (Slc25a39-007) 102404484-102407315 protein_coding
ENSMUST00000153395 (Slc25a39-002) 102403145-102407506 retained_intron
ENSMUST00000154001 (Slc25a39-006) 102404787-102407383 protein_coding
ENSMUST00000155104 (Slc25a39-010) 102404032-102406816 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005J9_0001ENSG00000013306ENST00000225308ENST00000377095ENST00000537904ENST00000585523ENST00000585636ENST00000585695ENST00000586016ENST00000586633ENST00000588049ENST00000588315ENST00000588767ENST00000590194ENST00000591006ENST00000591151ENST00000592372ENST00000592857ENST00000593166ENSG00000108309ENST00000225441ENST00000426726ENST00000587483ENST00000588564ENST00000590834ENST00000590941ENST00000593079ENST00000612735ENSG00000267750ENST00000586388ENST00000588097CIL_0005J9_0002ENSMUSG00000006575ENSMUST00000006750ENSMUST00000107102ENSMUST00000107103ENSMUST00000107105ENSMUST00000128331ENSMUST00000131219ENSMUST00000132876ENSMUST00000142157ENSMUST00000146330ENSMUST00000150982ENSMUSG00000018677ENSMUST00000018821ENSMUST00000107098ENSMUST00000123688ENSMUST00000124755ENSMUST00000128825ENSMUST00000130436ENSMUST00000134669ENSMUST00000141535ENSMUST00000142097ENSMUST00000147160ENSMUST00000147860ENSMUST00000149777ENSMUST00000153395ENSMUST00000154001ENSMUST00000155104
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005J9_0001ENSG00000013306ENST00000225308ENST00000377095ENST00000537904ENST00000586016ENST00000588767ENST00000590194ENST00000591006ENST00000591151ENST00000592372ENSG00000108309ENST00000225441ENST00000426726ENST00000587483ENST00000588564ENST00000590834ENST00000590941ENST00000593079ENST00000612735ENSG00000267750ENST00000586388ENST00000588097CIL_0005J9_0002ENSMUSG00000006575ENSMUST00000006750ENSMUST00000107102ENSMUST00000107103ENSMUST00000107105ENSMUST00000128331ENSMUST00000132876ENSMUST00000142157ENSMUST00000146330ENSMUST00000150982ENSMUSG00000018677ENSMUST00000018821ENSMUST00000107098ENSMUST00000128825ENSMUST00000134669ENSMUST00000149777ENSMUST00000153395ENSMUST00000155104
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013306 ENST00000225308 7.112±0.00 N/A 0.718±0.00 1.832±0.00 N/A 7.786±5.60 0.383±0.00 17.824±13.58 12.528±0.00 15.428±14.01 2.321±0.56 40.772±16.58 29.140±13.11 17.854±2.87
ENST00000377095 9.197±0.00 20.092±0.00 2.405±0.00 4.311±0.00 11.532±0.00 7.367±0.00 6.742±0.00 N/A 6.199±4.67 12.791±0.00 6.652±0.00 33.409±33.41 16.638±2.93 29.144±14.33
ENST00000537904 N/A N/A N/A 5.154±0.00 N/A 9.510±0.00 N/A N/A N/A N/A 2.551±0.00 N/A N/A N/A
ENST00000585523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586016 17.619±0.00 33.026±0.00 N/A 4.753±0.00 32.554±0.00 21.268±0.00 3.916±3.76 62.019±0.00 16.353±0.00 16.132±0.00 N/A 42.496±14.11 31.458±0.70 26.976±9.32
ENST00000586633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588767 N/A N/A 2.686±0.00 1.628±0.00 N/A 3.620±0.00 0.797±0.00 N/A N/A N/A N/A 4.779±0.00 N/A N/A
ENST00000590194 N/A N/A N/A N/A 9.364±0.00 N/A 5.064±0.00 N/A 8.306±0.00 20.886±0.00 4.939±0.00 52.527±36.43 20.484±10.09 17.258±0.00
ENST00000591006 N/A N/A N/A N/A 0.983±0.00 1.167±0.00 N/A N/A 0.268±0.00 0.108±0.00 N/A 1.245±0.00 N/A N/A
ENST00000591151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.781±0.00 N/A N/A N/A
ENST00000592372 N/A 22.043±0.00 N/A 8.555±0.00 N/A 10.965±0.00 N/A 42.536±0.00 19.996±0.00 25.483±0.00 8.659±0.00 N/A N/A 21.392±0.00
ENST00000592857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108309 ENST00000225441 N/A N/A N/A 27.234±5.05 0.249±0.00 N/A 0.020±0.00 N/A N/A N/A N/A 0.237±0.00 1.160±0.00 N/A
ENST00000426726 N/A N/A N/A 33.567±0.00 N/A 1.052±0.00 N/A N/A N/A N/A N/A 0.706±0.04 0.518±0.00 3.392±1.83
ENST00000587483 0.062±0.00 0.191±0.00 0.039±0.00 N/A N/A N/A 0.033±0.00 N/A 0.026±0.01 N/A N/A 0.117±0.03 N/A 0.786±0.00
ENST00000588564 N/A N/A N/A N/A N/A 1.794±0.00 N/A N/A N/A 1.131±0.00 N/A 1.490±0.00 1.876±0.09 N/A
ENST00000590834 N/A N/A N/A N/A 0.231±0.00 N/A 0.117±0.00 0.367±0.00 N/A N/A N/A N/A N/A 1.196±0.00
ENST00000590941 N/A N/A N/A 28.733±0.00 0.185±0.00 N/A 0.087±0.00 0.354±0.00 N/A 0.451±0.00 N/A 1.049±1.06 0.944±0.36 N/A
ENST00000593079 N/A N/A 0.455±0.00 N/A N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A
ENST00000612735 N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A 0.177±0.00 N/A N/A 2.440±1.88 0.801±0.35 6.021±0.00
ENSG00000267750 ENST00000586388 N/A N/A 0.108±0.00 N/A N/A 0.222±0.00 0.005±0.00 N/A N/A 0.072±0.00 N/A N/A N/A N/A
ENST00000588097 0.101±0.00 0.391±0.00 N/A N/A 0.145±0.00 0.063±0.00 0.036±0.03 0.207±0.00 0.063±0.00 0.072±0.00 0.096±0.00 0.052±0.00 N/A 0.269±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006575 ENSMUST00000006750 0.282±0.09 6.666±2.47 0.777±0.10 61.799±5.82 0.537±0.18 2.319±0.81 0.065±0.00 1.668±0.63 0.694±0.40 0.513±0.06 0.111±0.04 1.139±0.79 0.286±0.12 2.910±0.51
ENSMUST00000107102 N/A N/A N/A 37.208±0.00 N/A N/A N/A N/A N/A N/A N/A 0.324±0.00 N/A N/A
ENSMUST00000107103 N/A N/A N/A 21.765±0.00 N/A N/A N/A N/A N/A N/A N/A 0.547±0.00 0.130±0.00 N/A
ENSMUST00000107105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENSMUST00000128331 N/A N/A N/A 121.659±0.00 N/A N/A N/A N/A N/A N/A 0.146±0.00 0.637±0.00 N/A N/A
ENSMUST00000131219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A 15.277±0.00
ENSMUST00000142157 N/A 8.867±2.57 N/A N/A N/A 2.503±0.82 N/A N/A N/A N/A 0.145±0.07 1.000±0.00 0.415±0.00 6.351±0.00
ENSMUST00000146330 0.390±0.00 3.290±0.96 0.174±0.02 28.872±4.57 0.347±0.01 1.035±0.33 0.063±0.00 1.222±0.65 1.522±0.66 0.171±0.03 0.173±0.02 0.614±0.22 0.302±0.17 12.460±4.86
ENSMUST00000150982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.215±0.47 0.345±0.00 N/A
ENSMUSG00000018677 ENSMUST00000018821 77.597±8.76 152.733±34.76 40.379±0.57 23.925±11.10 58.507±13.63 66.341±29.01 37.878±18.32 236.083±14.49 167.137±34.12 30.608±11.01 17.851±3.02 66.415±18.04 68.752±25.73 264.596±134.06
ENSMUST00000107098 28.752±2.33 N/A N/A N/A 34.343±10.10 35.371±2.60 23.360±3.19 91.117±27.77 45.937±11.29 18.585±4.70 N/A 31.652±6.91 N/A 93.094±21.74
ENSMUST00000123688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128825 N/A N/A N/A 13.996±0.00 22.388±0.00 N/A N/A N/A N/A N/A N/A 24.961±0.00 14.070±0.61 35.824±0.00
ENSMUST00000130436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134669 N/A N/A N/A 10.846±0.00 N/A N/A N/A N/A N/A N/A N/A 25.137±0.00 19.944±4.44 38.802±0.00
ENSMUST00000141535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149777 75.691±12.40 330.230±51.48 N/A 17.880±0.00 125.519±46.30 142.867±30.96 47.131±9.78 200.386±58.40 250.396±62.85 53.059±0.43 N/A 98.999±25.67 N/A 229.259±29.00
ENSMUST00000153395 N/A N/A N/A N/A 12.171±0.00 N/A N/A N/A N/A N/A 5.843±0.00 19.371±4.19 N/A N/A
ENSMUST00000154001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155104 N/A N/A N/A N/A N/A N/A N/A N/A 66.004±0.00 N/A N/A 71.359±13.63 N/A N/A

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