| Transcript ID | Liver | Muscle | Testis |
|---|---|---|---|
| ENST00000225696 | 9.781±0.00 | 31.934±0.00 | 57.743±11.77 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | nucleoporin 88kDa | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSG00000108559  |
NUP88 | 9606 | - |
17:5360963-5420160  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENST00000225696 |
NUP88-004 | 5386102-5419466 | protein_coding | ||
| ENST00000570937 |
NUP88-007 | 5391475-5399633 | retained_intron | ||
| ENST00000572019 |
NUP88-009 | 5416553-5419676 | processed_transcript | ||
| ENST00000572290 |
NUP88-005 | 5414100-5419661 | nonsense_mediated_decay | ||
| ENST00000572809 |
NUP88-006 | 5408737-5418229 | protein_coding | ||
| ENST00000573169 |
NUP88-014 | 5360963-5386208 | processed_transcript | ||
| ENST00000573584 |
NUP88-001 | 5386026-5420160 | protein_coding | ||
| ENST00000574087 |
NUP88-011 | 5386687-5387912 | retained_intron | ||
| ENST00000574855 |
NUP88-012 | 5386104-5387132 | retained_intron | ||
| ENST00000574867 |
NUP88-002 | 5388376-5419662 | retained_intron | ||
| ENST00000575976 |
NUP88-008 | 5387544-5388250 | retained_intron | ||
| ENST00000576708 |
NUP88-010 | 5361814-5388850 | nonsense_mediated_decay | ||
| ENST00000576862 |
NUP88-013 | 5387084-5394979 | retained_intron | ||
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00020X | CIL_00020X_0001 | CGP | 17:5208961-5385812 |
| CIL_00060J | CIL_00060J_0002 | CGP | 17:5282265-5420160 |
| CIL_00045W | CIL_00045W_0001 | CGP | 17:5360963-5432876 |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000278 | TAS | mitotic cell cycle |
| GO:0005215 | TAS | transporter activity |
| GO:0005634 | IDA | nucleus |
| GO:0005643 | IEA | nuclear pore |
| GO:0005829 | TAS | cytosol |
| GO:0005975 | TAS | carbohydrate metabolic process |
| GO:0007077 | TAS | mitotic nuclear envelope disassembly |
| GO:0008645 | TAS | hexose transport |
| GO:0010827 | TAS | regulation of glucose transport |
| GO:0015031 | IEA | protein transport |
| GO:0015758 | TAS | glucose transport |
| GO:0016032 | TAS | viral process |
| GO:0019221 | TAS | cytokine-mediated signaling pathway |
| GO:0044281 | TAS | small molecule metabolic process |
| GO:0051028 | IEA | mRNA transport |
| GO:0055085 | TAS | transmembrane transport |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Description | Biotype | Species | |
|
ENSDARG00000003235
|
nup88 | nucleoporin 88 | protein_coding | Danio_rerio | |
|
ENSMUSG00000040667
|
Nup88 | nucleoporin 88 | protein_coding | Mus_musculus | |
