C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 88kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000573584 NUP88-001 ENSG00000108559 9606 - 17:5386026-5420160 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0001 CGP 17:5208961-5385812
CIL_00060J CIL_00060J_0002 CGP 17:5282265-5420160
CIL_00045W CIL_00045W_0001 CGP 17:5360963-5432876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005215 TAS transporter activity
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108530 Nup88-002 protein_coding Mus_musculus 0 2510
ENSMUST00000108531 Nup88-001 protein_coding Mus_musculus 0 2455
ENSMUST00000035283 Nup88-003 protein_coding Mus_musculus 0 2377
ENSMUST00000148168 Nup88-004 retained_intron Mus_musculus 0 1738
ENSMUST00000138634 Nup88-007 retained_intron Mus_musculus 0 1434
ENSMUST00000178253 Nup88-014 nonsense_mediated_decay Mus_musculus 0 909
ENSMUST00000141179 Nup88-009 retained_intron Mus_musculus 0 675
ENSMUST00000129615 Nup88-005 retained_intron Mus_musculus 0 316
ENSMUST00000123192 Nup88-006 retained_intron Mus_musculus 0 268
ENSMUST00000123917 Nup88-010 retained_intron Mus_musculus 0 222
ENSDART00000023123 nup88-001 protein_coding Danio_rerio 0 211

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