C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nucleoporin 88kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225696 NUP88-004 ENSG00000108559 9606 - 17:5386102-5419466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleTestisENST00000225696
Transcript ID Liver Muscle Testis
ENST00000225696 9.781±0.00 31.934±0.00 57.743±11.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0001 CGP 17:5208961-5385812
CIL_00060J CIL_00060J_0002 CGP 17:5282265-5420160
CIL_00045W CIL_00045W_0001 CGP 17:5360963-5432876

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108530 Nup88-002 protein_coding Mus_musculus 0 1565
ENSMUST00000035283 Nup88-003 protein_coding Mus_musculus 0 1565
ENSMUST00000108531 Nup88-001 protein_coding Mus_musculus 0 1565
ENSMUST00000148168 Nup88-004 retained_intron Mus_musculus 0 1565
ENSMUST00000141179 Nup88-009 retained_intron Mus_musculus 0 680
ENSMUST00000178253 Nup88-014 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000129615 Nup88-005 retained_intron Mus_musculus 0 316
ENSMUST00000123192 Nup88-006 retained_intron Mus_musculus 0 268
ENSMUST00000123917 Nup88-010 retained_intron Mus_musculus 0 228
ENSDART00000023123 nup88-001 protein_coding Danio_rerio 0 211

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