C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345851 TRIM3-001 ENSG00000110171 9606 - 11:6448615-6473984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000345851
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000345851 2.205±0.00 3.045±0.00 3.893±2.39 1.816±0.89 4.244±0.00 1.495±1.43 3.471±0.00 0.780±0.39 2.562±1.99 5.059±1.57 3.097±1.04 3.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A5 CIL_0004A5_0001 CGP 11:6431049-6474459
CIL_0004A8 CIL_0004A8_0001 CGP 11:6448613-6481479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 TAS cytoplasm
GO:0005768 IEA endosome
GO:0007399 TAS nervous system development
GO:0008022 TAS protein C-terminus binding
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057525 Trim3-003 protein_coding Mus_musculus 0 3567
ENSMUST00000106789 Trim3-001 protein_coding Mus_musculus 0 3480
ENSMUST00000106791 Trim3-002 protein_coding Mus_musculus 0 2785
ENSMUST00000153371 Trim3-006 protein_coding Mus_musculus 0 767
ENSMUST00000140882 Trim3-004 processed_transcript Mus_musculus 0 664
ENSMUST00000154218 Trim3-008 retained_intron Mus_musculus 0 595
ENSMUST00000147044 Trim3-005 protein_coding Mus_musculus 0 532
ENSMUST00000150363 Trim3-007 retained_intron Mus_musculus 0 486

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