C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536344 TRIM3-202 ENSG00000110171 9606 - 11:6448617-6473984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverMuscleOvaryPlacentaTestisENST00000536344
Transcript ID Adipose Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000536344 0.985±0.00 1.761±0.00 0.689±0.00 1.293±0.00 0.532±0.00 1.424±1.23 2.506±0.00 0.780±0.00 1.182±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A5 CIL_0004A5_0001 CGP 11:6431049-6474459
CIL_0004A8 CIL_0004A8_0001 CGP 11:6448613-6481479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 TAS cytoplasm
GO:0005768 IEA endosome
GO:0007399 TAS nervous system development
GO:0008022 TAS protein C-terminus binding
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106789 Trim3-001 protein_coding Mus_musculus 0 3206
ENSMUST00000057525 Trim3-003 protein_coding Mus_musculus 0 3206
ENSMUST00000106791 Trim3-002 protein_coding Mus_musculus 0 2518
ENSMUST00000154218 Trim3-008 retained_intron Mus_musculus 0 595
ENSMUST00000153371 Trim3-006 protein_coding Mus_musculus 0 496
ENSMUST00000150363 Trim3-007 retained_intron Mus_musculus 0 486
ENSMUST00000140882 Trim3-004 processed_transcript Mus_musculus 0 449
ENSMUST00000147044 Trim3-005 protein_coding Mus_musculus 0 300

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