C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611354 COL12A1-201 ENSG00000111799 9606 - 6:75084326-75205907 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyMuscleENST00000611354
Transcript ID Brain Breast Colon Heart Kidney Muscle
ENST00000611354 0.267±0.17 2.580±0.00 5.851±0.00 0.377±0.00 0.835±0.00 0.676±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061X CIL_00061X_0002 CGP 6:73695785-75206051
CIL_000624 CIL_000624_0003 CGP 6:75084326-75250323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005595 NAS collagen type XII trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 NAS extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030199 NAS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0031982 IDA vesicle
GO:0035987 IEP endodermal cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071750 Col12a1-001 protein_coding Mus_musculus 0 11520
ENSMUST00000121227 Col12a1-002 protein_coding Mus_musculus 0 10740
ENSMUST00000150289 Col12a1-006 retained_intron Mus_musculus 0 3064
ENSMUST00000135009 Col12a1-003 protein_coding Mus_musculus 0 983
ENSDART00000025926 col12a1b-201 protein_coding Danio_rerio 2e-24 121
ENSDART00000154728 col12a1a-001 protein_coding Danio_rerio 3e-17 97

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