C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425443 COL12A1-008 ENSG00000111799 9606 - 6:75084326-75119473 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000425443
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000425443 33.937±0.00 19.055±0.00 0.410±0.00 18.638±0.00 17.046±0.00 2.493±0.00 4.378±0.00 0.449±0.00 2.733±0.00 21.296±14.01 1.455±0.69 4.595±3.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061X CIL_00061X_0002 CGP 6:73695785-75206051
CIL_000624 CIL_000624_0003 CGP 6:75084326-75250323

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071750 Col12a1-001 protein_coding Mus_musculus 0 2728
ENSMUST00000121227 Col12a1-002 protein_coding Mus_musculus 0 2667
ENSMUST00000135009 Col12a1-003 protein_coding Mus_musculus 0 1607
ENSDART00000025926 col12a1b-201 protein_coding Danio_rerio 6e-25 121
ENSDART00000154728 col12a1a-001 protein_coding Danio_rerio 9e-18 97

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