C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060609-ENSDARG00000019601 CGP 7955 20:49424779-49993603
GeneTranscriptPositionBiotype
ENSDARG00000019601 (col12a1b)
collagen, type XII, alpha 1b 		ENSDART00000025926 (col12a1b-201) 49761926-49993603 protein_coding
ENSDART00000151239 (col12a1b-002) 49926504-49961600 protein_coding
ENSDART00000151248 (col12a1b-001) 49807729-49968441 protein_coding
ENSDARG00000060609 (CD109)
CD109 molecule 		ENSDART00000085574 (CD109-201) 49424800-49487262 protein_coding
ENSDART00000151435 (CD109-001) 49424779-49480648 protein_coding
CIL_00061X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156535-ENSG00000111799 CGP 9606 6:73695785-75206051
GeneTranscriptPositionBiotype
ENSG00000111799 (COL12A1)
collagen, type XII, alpha 1 		ENST00000322507 (COL12A1-001) 75084326-75206051 protein_coding
ENST00000345356 (COL12A1-002) 75086471-75205851 protein_coding
ENST00000416123 (COL12A1-009) 75086547-75202792 protein_coding
ENST00000419671 (COL12A1-007) 75133376-75152189 protein_coding
ENST00000425443 (COL12A1-008) 75084326-75119473 protein_coding
ENST00000474564 (COL12A1-005) 75143204-75146285 retained_intron
ENST00000483888 (COL12A1-003) 75087190-75205822 protein_coding
ENST00000486533 (COL12A1-004) 75177652-75188464 retained_intron
ENST00000493109 (COL12A1-006) 75113022-75119058 protein_coding
ENST00000511023 (COL12A1-010) 75089160-75101911 processed_transcript
ENST00000611354 (COL12A1-201) 75084326-75205907 protein_coding
ENST00000615798 (COL12A1-202) 75084326-75205907 protein_coding
ENSG00000156535 (CD109)
CD109 molecule 		ENST00000287097 (CD109-001) 73696104-73828313 protein_coding
ENST00000422508 (CD109-201) 73695785-73828316 protein_coding
ENST00000437994 (CD109-202) 73695785-73828316 protein_coding
ENST00000474094 (CD109-002) 73792655-73804076 processed_transcript
ENSG00000218483 (RP11-554D15.2)
 ENST00000401875 (RP11-554D15.2-001) 74610449-74610715 processed_pseudogene
ENSG00000219736 (RP11-560O20.1)
 ENST00000406203 (RP11-560O20.1-001) 74849077-74850484 processed_pseudogene
ENSG00000224583 (RP11-554D15.4)
 ENST00000421318 (RP11-554D15.4-001) 74642384-74652002 lincRNA
ENSG00000264884 (AL590684.1)
 ENST00000584571 (AL590684.1-201) 74719746-74719843 miRNA
ENSG00000272243 (RP11-554D15.3)
 ENST00000432484 (RP11-554D15.3-001) 74530248-74734279 lincRNA
ENST00000436672 (RP11-554D15.3-003) 74594179-74595213 lincRNA
ENST00000607807 (RP11-554D15.3-002) 74594583-74645640 lincRNA
ENSG00000279790 (RP11-374N7.2)
 ENST00000623164 (RP11-374N7.2-001) 73971346-73973115 TEC
CIL_00061X_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046186-ENSMUSG00000032332 CGP 10090 9:78615546-79718831
GeneTranscriptPositionBiotype
ENSMUSG00000032332 (Col12a1)
collagen, type XII, alpha 1 		ENSMUST00000071750 (Col12a1-001) 79598991-79718518 protein_coding
ENSMUST00000121227 (Col12a1-002) 79601759-79718720 protein_coding
ENSMUST00000122827 (Col12a1-004) 79712534-79718831 retained_intron
ENSMUST00000135009 (Col12a1-003) 79598991-79612970 protein_coding
ENSMUST00000141667 (Col12a1-005) 79714905-79718494 retained_intron
ENSMUST00000150289 (Col12a1-006) 79692028-79718720 retained_intron
ENSMUSG00000046186 (Cd109)
CD109 antigen 		ENSMUST00000093812 (Cd109-001) 78615546-78716253 protein_coding
ENSMUST00000163608 (Cd109-002) 78615763-78618089 processed_transcript
ENSMUSG00000059422 (Gm8116)
predicted gene 8116 		ENSMUST00000182917 (Gm8116-001) 78820638-78821838 processed_pseudogene
ENSMUSG00000086608 (4930562D21Rik)
RIKEN cDNA 4930562D21 gene 		ENSMUST00000123894 (4930562D21Rik-001) 79688776-79690907 antisense
ENSMUSG00000091147 (4921509A06Rik)
RIKEN cDNA 4921509A06 gene 		ENSMUST00000171278 (4921509A06Rik-001) 78629374-78630128 antisense
ENSMUSG00000102020 (RP23-261O3.1)
predicted gene 28620 		ENSMUST00000190463 (RP23-261O3.1-001) 79238620-79239058 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061X_0001ENSDARG00000019601ENSDART00000025926ENSDART00000151239ENSDART00000151248ENSDARG00000060609ENSDART00000085574ENSDART00000151435CIL_00061X_0002ENSG00000111799ENST00000322507ENST00000345356ENST00000416123ENST00000419671ENST00000425443ENST00000474564ENST00000483888ENST00000486533ENST00000493109ENST00000511023ENST00000611354ENST00000615798ENSG00000156535ENST00000287097ENST00000422508ENST00000437994ENST00000474094ENSG00000218483ENST00000401875ENSG00000219736ENST00000406203ENSG00000224583ENST00000421318ENSG00000264884ENST00000584571ENSG00000272243ENST00000432484ENST00000436672ENST00000607807ENSG00000279790ENST00000623164CIL_00061X_0003ENSMUSG00000032332ENSMUST00000071750ENSMUST00000121227ENSMUST00000122827ENSMUST00000135009ENSMUST00000141667ENSMUST00000150289ENSMUSG00000046186ENSMUST00000093812ENSMUST00000163608ENSMUSG00000059422ENSMUST00000182917ENSMUSG00000086608ENSMUST00000123894ENSMUSG00000091147ENSMUST00000171278ENSMUSG00000102020ENSMUST00000190463
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061X_0001ENSDARG00000019601ENSDART00000025926ENSDARG00000060609ENSDART00000085574ENSDART00000151435CIL_00061X_0002ENSG00000111799ENST00000322507ENST00000345356ENST00000416123ENST00000419671ENST00000425443ENST00000483888ENST00000486533ENST00000511023ENST00000611354ENST00000615798ENSG00000156535ENST00000287097ENST00000422508ENST00000437994ENSG00000218483ENST00000401875ENSG00000219736ENST00000406203ENSG00000224583ENST00000421318ENSG00000264884ENST00000584571ENSG00000272243ENST00000432484ENST00000436672ENST00000607807ENSG00000279790ENST00000623164CIL_00061X_0003ENSMUSG00000032332ENSMUST00000071750ENSMUST00000121227ENSMUST00000122827ENSMUST00000135009ENSMUST00000150289ENSMUSG00000046186ENSMUST00000093812ENSMUST00000163608ENSMUSG00000059422ENSMUST00000182917ENSMUSG00000086608ENSMUST00000123894ENSMUSG00000091147ENSMUST00000171278ENSMUSG00000102020ENSMUST00000190463
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019601 ENSDART00000025926 N/A N/A N/A 0.205±0.00 N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060609 ENSDART00000085574 N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 0.009±0.00 N/A N/A N/A N/A N/A
ENSDART00000151435 N/A N/A N/A 0.065±0.03 N/A N/A 0.112±0.04 N/A N/A N/A 0.030±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111799 ENST00000322507 N/A N/A N/A N/A 9.556±0.00 3.144±0.00 1.039±0.00 0.159±0.00 9.556±0.00 2.050±1.09 N/A 8.090±3.88 0.421±0.33 N/A
ENST00000345356 N/A N/A N/A 0.415±0.00 7.620±0.00 10.822±0.00 1.238±0.00 1.961±0.00 8.218±0.00 1.971±0.00 0.884±0.00 21.072±0.00 N/A 2.270±1.89
ENST00000416123 N/A N/A N/A 0.409±0.00 6.663±0.00 N/A N/A 0.589±0.00 N/A 2.821±0.00 N/A N/A N/A N/A
ENST00000419671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.400±0.00 N/A N/A N/A
ENST00000425443 33.937±0.00 19.055±0.00 N/A 0.410±0.00 18.638±0.00 17.046±0.00 2.493±0.00 4.378±0.00 0.449±0.00 2.733±0.00 N/A 21.296±14.01 1.455±0.69 4.595±3.09
ENST00000474564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.394±5.14 N/A N/A
ENST00000486533 N/A N/A 6.028±0.00 N/A N/A N/A N/A N/A N/A 7.996±0.00 N/A N/A N/A N/A
ENST00000493109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.430±0.00
ENST00000611354 N/A N/A N/A 0.267±0.17 2.580±0.00 5.851±0.00 0.377±0.00 0.835±0.00 N/A N/A 0.676±0.00 N/A N/A N/A
ENST00000615798 7.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156535 ENST00000287097 3.085±0.00 1.238±0.00 1.089±0.00 0.869±0.36 2.761±0.28 2.256±0.70 1.500±0.59 0.600±0.00 1.898±0.00 3.348±0.32 N/A 0.492±0.20 1.421±0.14 1.086±0.01
ENST00000422508 1.491±0.00 N/A N/A 0.386±0.00 0.349±0.00 0.983±0.00 N/A 1.001±0.00 N/A N/A 0.392±0.14 0.197±0.03 N/A 0.502±0.00
ENST00000437994 N/A N/A N/A N/A 0.774±0.00 N/A N/A 0.171±0.00 0.795±0.70 N/A N/A 0.578±0.00 0.345±0.00 N/A
ENST00000474094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000218483 ENST00000401875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A
ENSG00000219736 ENST00000406203 N/A N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A
ENSG00000224583 ENST00000421318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A
ENSG00000264884 ENST00000584571 N/A N/A N/A N/A N/A N/A N/A 1.657±0.00 N/A N/A N/A 0.794±0.00 N/A N/A
ENSG00000272243 ENST00000432484 N/A 0.014±0.00 N/A N/A 0.064±0.00 0.024±0.00 0.066±0.00 N/A N/A 0.505±0.00 N/A 0.044±0.00 N/A 0.036±0.01
ENST00000436672 N/A N/A N/A N/A N/A 0.301±0.00 N/A N/A N/A 1.635±0.00 N/A 0.068±0.00 0.035±0.00 0.139±0.03
ENST00000607807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.303±0.00 N/A N/A N/A
ENSG00000279790 ENST00000623164 0.124±0.00 0.552±0.00 0.034±0.00 0.295±0.00 0.410±0.00 0.162±0.00 0.319±0.00 0.513±0.00 0.053±0.00 0.349±0.00 N/A 0.124±0.06 0.036±0.01 0.274±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032332 ENSMUST00000071750 1.360±1.14 0.363±0.00 7.274±1.63 1.512±1.14 1.837±0.63 4.342±0.72 0.190±0.05 0.728±0.28 0.224±0.17 2.568±1.26 0.311±0.13 2.843±1.02 3.606±1.72 1.184±0.57
ENSMUST00000121227 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A
ENSMUST00000122827 N/A 1.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135009 1.226±0.08 2.410±0.30 41.586±0.00 2.641±1.32 1.836±0.50 10.624±0.50 0.295±0.04 2.021±0.17 0.736±0.34 6.045±1.30 1.135±0.38 5.392±1.18 7.091±4.08 1.017±0.00
ENSMUST00000141667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150289 N/A 1.638±0.41 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.383±0.00 N/A N/A
ENSMUSG00000046186 ENSMUST00000093812 1.299±0.89 0.103±0.06 1.646±0.01 0.447±0.19 1.317±0.29 1.948±0.37 0.464±0.08 0.178±0.05 0.054±0.04 0.789±0.35 0.179±0.04 0.717±0.28 1.780±0.64 3.210±0.89
ENSMUST00000163608 N/A 1.163±0.38 N/A N/A 1.998±0.12 2.486±0.89 N/A 0.371±0.00 N/A N/A N/A 2.098±1.14 N/A N/A
ENSMUSG00000059422 ENSMUST00000182917 0.553±0.10 0.103±0.03 0.096±0.08 0.093±0.05 0.671±0.33 0.271±0.17 0.717±0.10 0.373±0.18 0.422±0.35 0.426±0.10 1.077±0.32 0.538±0.40 0.902±0.86 0.506±0.24
ENSMUSG00000086608 ENSMUST00000123894 N/A N/A 0.026±0.00 0.015±0.00 N/A N/A N/A N/A 0.003±0.00 0.042±0.00 N/A N/A 0.024±0.00 1.589±0.45
ENSMUSG00000091147 ENSMUST00000171278 0.158±0.00 N/A 0.052±0.02 0.136±0.00 N/A N/A 0.139±0.00 0.297±0.00 N/A N/A N/A N/A N/A 7.173±0.00
ENSMUSG00000102020 ENSMUST00000190463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.01

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