C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231134 PCDHB5-001 ENSG00000113209 9606 + 5:141135218-141138625 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaENST00000231134
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta
ENST00000231134 0.870±0.00 2.670±0.64 0.760±0.00 1.105±0.35 1.128±0.97 0.823±0.69 2.096±0.97 0.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636
CIL_00062S CIL_00062S_0005 CGP 5:141100473-141152636
CIL_00062S CIL_00062S_0003 CGP 5:141121799-141138625
CIL_00062S CIL_00062S_0006 CGP 5:141135218-141153287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051163 Pcdhb8-201 protein_coding Mus_musculus 0 1794
ENSMUST00000061717 Pcdhb6-201 protein_coding Mus_musculus 0 1783
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 1746
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 1690
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 0 1631
ENSMUST00000055495 Pcdhb12-201 protein_coding Mus_musculus 0 1613
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 1186
ENSMUST00000097609 Pcdhb22-201 protein_coding Mus_musculus 0 976
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 929
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 918
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 915
ENSMUST00000055949 Pcdhb18-201 protein_coding Mus_musculus 0 898

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