C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TIA1 cytotoxic granule-associated RNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116001 TIA1 9606 - 2:70209444-70248660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000282574 TIA1-006 70210204-70248580 protein_coding
  ENST00000361692 TIA1-023 70224426-70236175 protein_coding
  ENST00000415783 TIA1-002 70209444-70248660 protein_coding
  ENST00000416149 TIA1-004 70216672-70248454 protein_coding
  ENST00000433529 TIA1-001 70209444-70248641 protein_coding
  ENST00000445587 TIA1-003 70212317-70248610 protein_coding
  ENST00000454815 TIA1-013 70214352-70229318 protein_coding
  ENST00000468787 TIA1-020 70214364-70216844 processed_transcript
  ENST00000474699 TIA1-015 70216822-70225066 retained_intron
  ENST00000474809 TIA1-009 70216848-70248658 nonsense_mediated_decay
  ENST00000477044 TIA1-008 70224424-70248611 nonsense_mediated_decay
  ENST00000477415 TIA1-017 70216153-70227823 retained_intron
  ENST00000481650 TIA1-011 70229190-70248622 retained_intron
  ENST00000482876 TIA1-018 70215125-70224592 processed_transcript
  ENST00000484065 TIA1-022 70216425-70217160 retained_intron
  ENST00000486392 TIA1-016 70212676-70215322 retained_intron
  ENST00000495774 TIA1-021 70212749-70215660 retained_intron
  ENST00000496096 TIA1-014 70216234-70227839 retained_intron
  ENST00000496452 TIA1-010 70228898-70248640 retained_intron
  ENST00000497672 TIA1-019 70216119-70216828 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000282574ENST00000415783ENST00000416149ENST00000433529ENST00000454815ENST00000496452
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000282574 2.086±0.00 N/A 1.592±0.32 3.268±1.65 4.058±1.54 2.012±0.77 3.449±1.75 1.922±1.11 2.762±0.10 1.062±0.00 6.059±2.77 1.661±0.21 4.457±0.00
ENST00000415783 N/A N/A 1.667±0.00 3.023±0.00 2.544±0.51 0.981±0.00 1.530±0.00 1.915±0.00 1.157±0.00 0.500±0.00 3.721±0.42 0.676±0.00 N/A
ENST00000416149 N/A 4.843±0.00 N/A 10.387±0.00 N/A N/A N/A 8.056±0.00 8.436±0.00 2.545±0.00 N/A N/A N/A
ENST00000433529 2.357±0.00 N/A 1.060±0.00 0.817±0.00 N/A N/A N/A N/A 2.233±0.00 N/A N/A 1.214±0.22 2.725±0.00
ENST00000454815 N/A N/A 4.549±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496452 N/A 9.909±0.00 N/A N/A 12.993±0.00 5.025±0.00 N/A 10.404±0.00 10.244±0.00 N/A 19.466±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0008143 TAS poly(A) binding
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IEA AU-rich element binding
GO:0017148 IEA negative regulation of translation
GO:0042036 IEA negative regulation of cytokine biosynthetic process
GO:0044822 IDA poly(A) RNA binding
GO:0048024 IDA regulation of mRNA splicing, via spliceosome
GO:0097165 IDA nuclear stress granule

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000071337 Tia1 cytotoxic granule-associated RNA binding protein 1 protein_coding Mus_musculus

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