C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TIA1 cytotoxic granule-associated RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433529 TIA1-001 ENSG00000116001 9606 - 2:70209444-70248641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLungPlacentaTestisENST00000433529
Transcript ID Adipose Brain Breast Lung Placenta Testis
ENST00000433529 2.357±0.00 1.060±0.00 0.817±0.00 2.233±0.00 1.214±0.22 2.725±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0008143 TAS poly(A) binding
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IEA AU-rich element binding
GO:0017148 IEA negative regulation of translation
GO:0042036 IEA negative regulation of cytokine biosynthetic process
GO:0044822 IDA poly(A) RNA binding
GO:0048024 IDA regulation of mRNA splicing, via spliceosome
GO:0097165 IDA nuclear stress granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095753 Tia1-001 protein_coding Mus_musculus 0 3014
ENSMUST00000113713 Tia1-007 protein_coding Mus_musculus 0 2398
ENSMUST00000095752 Tia1-003 protein_coding Mus_musculus 0 2398
ENSMUST00000113712 Tia1-005 nonsense_mediated_decay Mus_musculus 0 1995
ENSMUST00000095754 Tia1-010 protein_coding Mus_musculus 0 1762
ENSMUST00000134142 Tia1-008 retained_intron Mus_musculus 0 1585
ENSMUST00000154438 Tia1-022 processed_transcript Mus_musculus 0 1016
ENSMUST00000113708 Tia1-009 protein_coding Mus_musculus 0 900
ENSMUST00000148728 Tia1-012 processed_transcript Mus_musculus 0 833
ENSMUST00000130967 Tia1-002 protein_coding Mus_musculus 0 682
ENSMUST00000139928 Tia1-014 processed_transcript Mus_musculus 0 603
ENSMUST00000126404 Tia1-019 processed_transcript Mus_musculus 0 564
ENSMUST00000143718 Tia1-013 processed_transcript Mus_musculus 0 564
ENSMUST00000156762 Tia1-017 processed_transcript Mus_musculus 0 503
ENSMUST00000124683 Tia1-024 processed_transcript Mus_musculus 0 481
ENSMUST00000123267 Tia1-021 processed_transcript Mus_musculus 0 388
ENSMUST00000141960 Tia1-006 retained_intron Mus_musculus 0 344
ENSMUST00000136387 Tia1-011 retained_intron Mus_musculus 0 322
ENSMUST00000149270 Tia1-023 retained_intron Mus_musculus 0 272
ENSMUST00000154983 Tia1-004 processed_transcript Mus_musculus 0 202
ENSMUST00000152852 Tia1-020 retained_intron Mus_musculus 4e-38 165
ENSMUST00000123002 Tia1-018 processed_transcript Mus_musculus 8e-25 121

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