C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TIA1 cytotoxic granule-associated RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415783 TIA1-002 ENSG00000116001 9606 - 2:70209444-70248660 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000415783
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000415783 1.667±0.00 3.023±0.00 2.544±0.51 0.981±0.00 1.530±0.00 1.915±0.00 1.157±0.00 0.500±0.00 3.721±0.42 0.676±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0006915 IEA apoptotic process
GO:0008143 TAS poly(A) binding
GO:0010494 IDA cytoplasmic stress granule
GO:0044822 IDA poly(A) RNA binding
GO:0048024 IDA regulation of mRNA splicing, via spliceosome
GO:0097165 IDA nuclear stress granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095752 Tia1-003 protein_coding Mus_musculus 0 2920
ENSMUST00000113713 Tia1-007 protein_coding Mus_musculus 0 2874
ENSMUST00000095753 Tia1-001 protein_coding Mus_musculus 0 2398
ENSMUST00000113712 Tia1-005 nonsense_mediated_decay Mus_musculus 0 1995
ENSMUST00000134142 Tia1-008 retained_intron Mus_musculus 0 1585
ENSMUST00000130967 Tia1-002 protein_coding Mus_musculus 0 1158
ENSMUST00000095754 Tia1-010 protein_coding Mus_musculus 0 1147
ENSMUST00000154438 Tia1-022 processed_transcript Mus_musculus 0 1009
ENSMUST00000148728 Tia1-012 processed_transcript Mus_musculus 0 833
ENSMUST00000156762 Tia1-017 processed_transcript Mus_musculus 0 614
ENSMUST00000126404 Tia1-019 processed_transcript Mus_musculus 0 564
ENSMUST00000139928 Tia1-014 processed_transcript Mus_musculus 0 542
ENSMUST00000143718 Tia1-013 processed_transcript Mus_musculus 0 503
ENSMUST00000124683 Tia1-024 processed_transcript Mus_musculus 0 473
ENSMUST00000113708 Tia1-009 protein_coding Mus_musculus 0 435
ENSMUST00000136387 Tia1-011 retained_intron Mus_musculus 0 429
ENSMUST00000123267 Tia1-021 processed_transcript Mus_musculus 0 388
ENSMUST00000141960 Tia1-006 retained_intron Mus_musculus 0 344
ENSMUST00000149270 Tia1-023 retained_intron Mus_musculus 0 263
ENSMUST00000154983 Tia1-004 processed_transcript Mus_musculus 0 204
ENSMUST00000152852 Tia1-020 retained_intron Mus_musculus 4e-38 165
ENSMUST00000123002 Tia1-018 processed_transcript Mus_musculus 8e-25 121

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