C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TIA1 cytotoxic granule-associated RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454815 TIA1-013 ENSG00000116001 9606 - 2:70214352-70229318 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000454815
Transcript ID Brain
ENST00000454815 4.549±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113712 Tia1-005 nonsense_mediated_decay Mus_musculus 0 1136
ENSMUST00000126404 Tia1-019 processed_transcript Mus_musculus 0 1092
ENSMUST00000134142 Tia1-008 retained_intron Mus_musculus 0 608
ENSMUST00000113713 Tia1-007 protein_coding Mus_musculus 0 608
ENSMUST00000095752 Tia1-003 protein_coding Mus_musculus 0 608
ENSMUST00000095753 Tia1-001 protein_coding Mus_musculus 0 608
ENSMUST00000095754 Tia1-010 protein_coding Mus_musculus 0 608
ENSMUST00000154438 Tia1-022 processed_transcript Mus_musculus 0 606
ENSMUST00000148728 Tia1-012 processed_transcript Mus_musculus 0 538
ENSMUST00000113708 Tia1-009 protein_coding Mus_musculus 0 532
ENSMUST00000130967 Tia1-002 protein_coding Mus_musculus 0 398
ENSMUST00000123267 Tia1-021 processed_transcript Mus_musculus 0 388
ENSMUST00000124683 Tia1-024 processed_transcript Mus_musculus 0 363
ENSMUST00000152852 Tia1-020 retained_intron Mus_musculus 0 294
ENSMUST00000143718 Tia1-013 processed_transcript Mus_musculus 3e-33 147
ENSMUST00000139928 Tia1-014 processed_transcript Mus_musculus 3e-33 147
ENSMUST00000123002 Tia1-018 processed_transcript Mus_musculus 2e-25 121
ENSMUST00000156762 Tia1-017 processed_transcript Mus_musculus 2e-20 104
ENSMUST00000136387 Tia1-011 retained_intron Mus_musculus 2e-19 100
ENSMUST00000149270 Tia1-023 retained_intron Mus_musculus 3e-17 94

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