C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytotoxic granule-associated RNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071337 Tia1 10090 + 6:86404219-86433403 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095752 Tia1-003 86404313-86432180 protein_coding
  ENSMUST00000095753 Tia1-001 86404219-86433403 protein_coding
  ENSMUST00000095754 Tia1-010 86404219-86431201 protein_coding
  ENSMUST00000113708 Tia1-009 86404473-86425285 protein_coding
  ENSMUST00000113712 Tia1-005 86404325-86433227 nonsense_mediated_decay
  ENSMUST00000113713 Tia1-007 86404336-86432180 protein_coding
  ENSMUST00000123002 Tia1-018 86419929-86424423 processed_transcript
  ENSMUST00000123267 Tia1-021 86425476-86430302 processed_transcript
  ENSMUST00000124683 Tia1-024 86419397-86425510 processed_transcript
  ENSMUST00000126404 Tia1-019 86420256-86427770 processed_transcript
  ENSMUST00000130967 Tia1-002 86404314-86430771 protein_coding
  ENSMUST00000134142 Tia1-008 86404381-86430772 retained_intron
  ENSMUST00000136387 Tia1-011 86413827-86422119 retained_intron
  ENSMUST00000139928 Tia1-014 86404296-86419794 processed_transcript
  ENSMUST00000141960 Tia1-006 86404291-86417991 retained_intron
  ENSMUST00000143718 Tia1-013 86404336-86419840 processed_transcript
  ENSMUST00000147104 Tia1-016 86419205-86423615 processed_transcript
  ENSMUST00000148728 Tia1-012 86404296-86427753 processed_transcript
  ENSMUST00000149270 Tia1-023 86413846-86419875 retained_intron
  ENSMUST00000152852 Tia1-020 86425001-86425700 retained_intron
  ENSMUST00000154438 Tia1-022 86404317-86427808 processed_transcript
  ENSMUST00000154983 Tia1-004 86404282-86407115 processed_transcript
  ENSMUST00000156762 Tia1-017 86404323-86423863 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095752ENSMUST00000095753ENSMUST00000113712ENSMUST00000113713ENSMUST00000126404ENSMUST00000134142ENSMUST00000136387ENSMUST00000139928
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095752 9.588±2.84 7.724±3.22 8.764±1.25 36.657±6.74 8.288±1.76 8.050±1.45 4.335±0.50 3.802±1.20 2.416±1.24 8.047±0.67 1.667±0.30 24.432±7.47 4.143±1.34 3.289±0.29
ENSMUST00000095753 N/A N/A 3.487±1.47 19.231±4.74 N/A 2.729±1.10 1.539±0.00 1.199±0.23 3.247±1.02 2.482±0.55 1.175±0.22 5.689±0.97 2.152±1.19 1.284±0.41
ENSMUST00000113712 3.603±0.70 3.284±0.07 5.424±1.67 32.228±5.96 2.836±0.48 1.680±0.13 1.440±0.23 1.456±0.34 2.267±0.76 3.005±0.59 1.459±0.28 5.484±1.18 1.906±0.41 1.016±0.47
ENSMUST00000113713 N/A 7.197±3.17 N/A N/A 3.642±0.52 N/A N/A N/A 0.693±0.00 N/A N/A 10.838±2.79 N/A N/A
ENSMUST00000126404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.954±0.00
ENSMUST00000134142 4.632±0.05 N/A 3.745±0.00 21.421±3.31 N/A N/A 1.260±0.00 N/A 1.420±0.59 2.438±0.00 N/A 5.916±0.80 1.466±0.36 N/A
ENSMUST00000136387 N/A N/A N/A 8.103±0.00 N/A N/A N/A N/A N/A N/A N/A 12.753±0.00 1.309±0.41 0.780±0.00
ENSMUST00000139928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IDA AU-rich element binding
GO:0017148 IMP negative regulation of translation
GO:0042036 IMP negative regulation of cytokine biosynthetic process
GO:0044822 IEA poly(A) RNA binding
GO:0048024 IEA regulation of mRNA splicing, via spliceosome
GO:0097165 ISO nuclear stress granule

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000116001 TIA1 TIA1 cytotoxic granule-associated RNA binding protein protein_coding Homo_sapiens

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