C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small ubiquitin-like modifier 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116030 SUMO1 9606 - 2:202206180-202238608 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392244 SUMO1-007 202206768-202238566 protein_coding
  ENST00000392245 SUMO1-201 202206187-202238599 protein_coding
  ENST00000392246 SUMO1-001 202206180-202238608 protein_coding
  ENST00000409181 SUMO1-005 202206870-202238569 protein_coding
  ENST00000409205 SUMO1-010 202207031-202238462 protein_coding
  ENST00000409368 SUMO1-002 202206650-202238594 protein_coding
  ENST00000409498 SUMO1-003 202207008-202238586 protein_coding
  ENST00000409627 SUMO1-006 202207142-202238566 nonsense_mediated_decay
  ENST00000409712 SUMO1-004 202206851-202238576 protein_coding
  ENST00000469034 SUMO1-008 202207246-202222006 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392244ENST00000392246ENST00000409181ENST00000409368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392244 18.447±0.00 15.250±0.00 N/A N/A 16.784±0.00 N/A 7.824±0.00 15.001±0.00 N/A 11.722±0.00 5.205±0.00 32.082±0.00 26.070±0.00 18.597±0.00
ENST00000392246 14.412±0.00 7.599±0.00 5.014±0.00 26.076±4.87 7.510±0.13 5.750±1.44 5.059±2.86 11.019±0.17 4.539±0.95 6.192±0.16 5.621±0.00 17.898±5.86 15.508±8.31 28.244±0.00
ENST00000409181 10.054±0.00 N/A 5.676±0.00 18.729±11.18 2.832±0.00 7.213±0.00 N/A 7.721±0.00 7.979±0.00 N/A 4.694±0.00 6.964±0.00 10.858±0.00 N/A
ENST00000409368 N/A 10.852±0.00 N/A N/A 15.843±0.00 N/A 7.149±0.00 12.340±0.00 3.143±0.00 15.921±0.00 3.077±0.38 106.831±0.00 52.100±0.00 33.689±19.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020U CIL_00020U_0001 CGP 2:202073255-202238608
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001650 IEA fibrillar center
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005643 TAS nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006281 TAS DNA repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0016604 IEA nuclear body
GO:0016605 IDA PML body
GO:0016925 IDA protein sumoylation
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0019789 IEA SUMO ligase activity
GO:0030425 IEA dendrite
GO:0030578 IEA PML body organization
GO:0031334 IDA positive regulation of protein complex assembly
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031965 IDA nuclear membrane
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880 TAS regulation of protein localization
GO:0043392 IMP negative regulation of DNA binding
GO:0043433 IMP negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045202 IEA synapse
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0060021 ISS palate development
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060334 TAS regulation of interferon-gamma-mediated signaling pathway
GO:0090204 IEA protein localization to nuclear pore

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044267 sumo1 SMT3 suppressor of mif two 3 homolog 1 (yeast) protein_coding Danio_rerio
ENSMUSG00000026021 Sumo1 SMT3 suppressor of mif two 3 homolog 1 (yeast) protein_coding Mus_musculus

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