C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ubiquitin-like modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392246 SUMO1-001 ENSG00000116030 9606 - 2:202206180-202238608 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392246 14.412±0.00 7.599±0.00 5.014±0.00 26.076±4.87 7.510±0.13 5.750±1.44 5.059±2.86 11.019±0.17 4.539±0.95 6.192±0.16 5.621±0.00 17.898±5.86 15.508±8.31 28.244±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020U CIL_00020U_0001 CGP 2:202073255-202238608
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001650 IEA fibrillar center
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005643 TAS nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006281 TAS DNA repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0016604 IEA nuclear body
GO:0016605 IDA PML body
GO:0016925 IDA protein sumoylation
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0019789 IEA SUMO ligase activity
GO:0030425 IEA dendrite
GO:0030578 IEA PML body organization
GO:0031334 IDA positive regulation of protein complex assembly
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031965 IDA nuclear membrane
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880 TAS regulation of protein localization
GO:0043392 IMP negative regulation of DNA binding
GO:0043433 IMP negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045202 IEA synapse
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0060021 ISS palate development
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060334 TAS regulation of interferon-gamma-mediated signaling pathway
GO:0090204 IEA protein localization to nuclear pore

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091374 Sumo1-001 protein_coding Mus_musculus 0 1352
ENSMUST00000120455 Gm14269-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000185265 Sumo1-004 protein_coding Mus_musculus 0 460
ENSMUST00000123857 Sumo1-002 retained_intron Mus_musculus 0 412
ENSMUST00000191158 Sumo1-003 processed_transcript Mus_musculus 0 228

Loading