C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00020T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116030-ENSG00000055044 CGP 9606 2:202206180-202303666
GeneTranscriptPositionBiotype
ENSG00000055044 (NOP58)
NOP58 ribonucleoprotein 		ENST00000264279 (NOP58-001) 202265716-202303666 protein_coding
ENST00000426814 (NOP58-006) 202265736-202284378 nonsense_mediated_decay
ENST00000433543 (NOP58-008) 202284438-202297906 nonsense_mediated_decay
ENST00000467734 (NOP58-007) 202265779-202284481 processed_transcript
ENST00000472050 (NOP58-003) 202265765-202284434 processed_transcript
ENST00000478508 (NOP58-010) 202299858-202303433 processed_transcript
ENST00000478941 (NOP58-004) 202278131-202290372 retained_intron
ENST00000488403 (NOP58-002) 202265736-202284712 retained_intron
ENST00000492688 (NOP58-005) 202275162-202291051 processed_transcript
ENST00000492740 (NOP58-009) 202265765-202275683 retained_intron
ENSG00000116030 (SUMO1)
small ubiquitin-like modifier 1 		ENST00000392244 (SUMO1-007) 202206768-202238566 protein_coding
ENST00000392245 (SUMO1-201) 202206187-202238599 protein_coding
ENST00000392246 (SUMO1-001) 202206180-202238608 protein_coding
ENST00000409181 (SUMO1-005) 202206870-202238569 protein_coding
ENST00000409205 (SUMO1-010) 202207031-202238462 protein_coding
ENST00000409368 (SUMO1-002) 202206650-202238594 protein_coding
ENST00000409498 (SUMO1-003) 202207008-202238586 protein_coding
ENST00000409627 (SUMO1-006) 202207142-202238566 nonsense_mediated_decay
ENST00000409712 (SUMO1-004) 202206851-202238576 protein_coding
ENST00000469034 (SUMO1-008) 202207246-202222006 processed_transcript
ENSG00000212534 (SNORD70)
small nucleolar RNA, C/D box 70 		ENST00000391232 (SNORD70-201) 202276431-202276518 snoRNA
ENSG00000238317 (SNORD11)
small nucleolar RNA, C/D box 11 		ENST00000459124 (SNORD11-201) 202293051-202293134 snoRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00020T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026021-ENSMUSG00000026020 CGP 10090 1:59586558-59719044
GeneTranscriptPositionBiotype
ENSMUSG00000026020 (Nop58)
NOP58 ribonucleoprotein 		ENSMUST00000027174 (Nop58-002) 59684977-59711510 protein_coding
ENSMUST00000185368 (Nop58-008) 59692444-59704209 retained_intron
ENSMUST00000185772 (Nop58-004) 59685021-59696052 protein_coding
ENSMUST00000186044 (Nop58-005) 59685006-59690989 retained_intron
ENSMUST00000187491 (Nop58-015) 59704159-59709099 nonsense_mediated_decay
ENSMUST00000187837 (Nop58-011) 59704198-59711279 protein_coding
ENSMUST00000188390 (Nop58-013) 59704709-59711280 protein_coding
ENSMUST00000189289 (Nop58-007) 59685003-59692688 retained_intron
ENSMUST00000189327 (Nop58-010) 59685054-59698422 nonsense_mediated_decay
ENSMUST00000189919 (Nop58-012) 59696027-59704161 nonsense_mediated_decay
ENSMUST00000190231 (Nop58-009) 59684985-59696077 protein_coding
ENSMUST00000190265 (Nop58-014) 59698416-59707064 nonsense_mediated_decay
ENSMUST00000190759 (Nop58-006) 59690179-59698386 retained_intron
ENSMUST00000191088 (Nop58-003) 59684971-59692666 processed_transcript
ENSMUST00000191142 (Nop58-001) 59685009-59719044 protein_coding
ENSMUSG00000026021 (Sumo1)
SMT3 suppressor of mif two 3 homolog 1 (yeast) 		ENSMUST00000091374 (Sumo1-001) 59639434-59670834 protein_coding
ENSMUST00000123857 (Sumo1-002) 59643996-59670834 retained_intron
ENSMUST00000185265 (Sumo1-004) 59639944-59670739 protein_coding
ENSMUST00000191158 (Sumo1-003) 59586558-59670792 processed_transcript
ENSMUSG00000047361 (Gm973)
predicted gene 973 		ENSMUST00000114243 (Gm973-001) 59516264-59634509 protein_coding
ENSMUST00000185291 (Gm973-005) 59544221-59556294 retained_intron
ENSMUST00000185753 (Gm973-003) 59606816-59630303 processed_transcript
ENSMUST00000186310 (Gm973-006) 59548831-59562791 processed_transcript
ENSMUST00000186434 (Gm973-004) 59524294-59526971 protein_coding
ENSMUST00000187454 (Gm973-002) 59606782-59628261 processed_transcript
ENSMUST00000187979 (Gm973-007) 59558008-59566636 retained_intron
ENSMUST00000190490 (Gm973-008) 59630323-59636417 protein_coding
ENSMUST00000191051 (Gm973-009) 59619414-59628243 processed_transcript
ENSMUSG00000101400 (RP24-147G7.3)
predicted gene 29596 		ENSMUST00000185710 (RP24-147G7.3-001) 59673241-59673625 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020T_0001ENSG00000055044ENST00000264279ENST00000426814ENST00000433543ENST00000467734ENST00000472050ENST00000478508ENST00000478941ENST00000488403ENST00000492688ENST00000492740ENSG00000116030ENST00000392244ENST00000392245ENST00000392246ENST00000409181ENST00000409205ENST00000409368ENST00000409498ENST00000409627ENST00000409712ENST00000469034ENSG00000212534ENST00000391232ENSG00000238317ENST00000459124CIL_00020T_0002ENSMUSG00000026020ENSMUST00000027174ENSMUST00000185368ENSMUST00000185772ENSMUST00000186044ENSMUST00000187491ENSMUST00000187837ENSMUST00000188390ENSMUST00000189289ENSMUST00000189327ENSMUST00000189919ENSMUST00000190231ENSMUST00000190265ENSMUST00000190759ENSMUST00000191088ENSMUST00000191142ENSMUSG00000026021ENSMUST00000091374ENSMUST00000123857ENSMUST00000185265ENSMUST00000191158ENSMUSG00000047361ENSMUST00000114243ENSMUST00000185291ENSMUST00000185753ENSMUST00000186310ENSMUST00000186434ENSMUST00000187454ENSMUST00000187979ENSMUST00000190490ENSMUST00000191051ENSMUSG00000101400ENSMUST00000185710
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020T_0001ENSG00000055044ENST00000264279ENST00000433543ENST00000478508ENST00000488403ENST00000492688ENSG00000116030ENST00000392244ENST00000392246ENST00000409181ENST00000409368ENSG00000212534ENST00000391232ENSG00000238317ENST00000459124CIL_00020T_0002ENSMUSG00000026020ENSMUST00000027174ENSMUST00000187491ENSMUST00000187837ENSMUST00000188390ENSMUST00000189289ENSMUST00000189919ENSMUST00000190231ENSMUST00000190265ENSMUST00000191088ENSMUST00000191142ENSMUSG00000026021ENSMUST00000091374ENSMUST00000123857ENSMUSG00000047361ENSMUST00000114243ENSMUSG00000101400ENSMUST00000185710
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000055044 ENST00000264279 8.604±0.00 19.913±0.00 0.606±0.00 6.037±4.22 4.320±2.03 7.708±5.45 4.082±3.03 14.118±0.00 6.595±4.05 8.388±0.00 3.056±0.00 28.049±23.39 10.639±6.41 19.092±0.99
ENST00000426814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433543 N/A N/A 1.812±0.00 N/A N/A N/A 1.667±0.00 N/A N/A N/A N/A 63.802±0.00 N/A 18.889±0.00
ENST00000467734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478508 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.940±0.00 N/A N/A N/A N/A
ENST00000478941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488403 N/A N/A 2.910±0.00 N/A N/A N/A N/A N/A 3.956±0.00 N/A N/A N/A N/A N/A
ENST00000492688 N/A N/A N/A N/A N/A N/A N/A 6.967±0.00 N/A N/A 2.105±0.00 20.572±0.00 N/A N/A
ENST00000492740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000116030 ENST00000392244 18.447±0.00 15.250±0.00 N/A N/A 16.784±0.00 N/A 7.824±0.00 15.001±0.00 N/A 11.722±0.00 5.205±0.00 32.082±0.00 26.070±0.00 18.597±0.00
ENST00000392245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392246 14.412±0.00 7.599±0.00 5.014±0.00 26.076±4.87 7.510±0.13 5.750±1.44 5.059±2.86 11.019±0.17 4.539±0.95 6.192±0.16 5.621±0.00 17.898±5.86 15.508±8.31 28.244±0.00
ENST00000409181 10.054±0.00 N/A 5.676±0.00 18.729±11.18 2.832±0.00 7.213±0.00 N/A 7.721±0.00 7.979±0.00 N/A 4.694±0.00 6.964±0.00 10.858±0.00 N/A
ENST00000409205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409368 N/A 10.852±0.00 N/A N/A 15.843±0.00 N/A 7.149±0.00 12.340±0.00 3.143±0.00 15.921±0.00 3.077±0.38 106.831±0.00 52.100±0.00 33.689±19.71
ENST00000409498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212534 ENST00000391232 N/A N/A N/A N/A N/A N/A N/A 0.909±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000238317 ENST00000459124 N/A N/A N/A 0.790±0.00 1.002±0.00 N/A N/A N/A N/A 1.753±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026020 ENSMUST00000027174 8.094±4.49 3.052±0.67 6.157±0.11 9.607±5.08 5.448±0.87 5.202±1.33 3.726±0.38 4.217±1.06 10.800±8.59 4.625±0.84 3.564±0.38 8.639±5.72 21.036±14.26 14.155±1.10
ENSMUST00000185368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 217.080±0.00 328.367±238.19 551.197±0.00
ENSMUST00000187837 N/A N/A N/A 29.622±0.00 N/A N/A N/A N/A N/A N/A 3.005±0.29 54.909±39.04 106.552±106.96 154.361±0.00
ENSMUST00000188390 N/A N/A N/A 24.455±0.00 N/A N/A N/A N/A N/A N/A N/A 72.246±0.00 136.747±93.74 165.088±0.00
ENSMUST00000189289 N/A 26.177±3.87 N/A N/A 15.488±8.65 20.039±6.58 N/A 4.259±1.54 4.058±0.00 6.690±1.35 N/A 22.096±5.95 N/A N/A
ENSMUST00000189327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189919 N/A N/A N/A 18.552±0.00 N/A N/A N/A N/A N/A N/A N/A 53.520±0.00 27.056±0.00 N/A
ENSMUST00000190231 N/A 6.188±2.61 N/A N/A 10.566±4.18 N/A N/A N/A N/A N/A N/A 29.713±6.73 N/A N/A
ENSMUST00000190265 N/A N/A N/A 15.483±0.00 N/A N/A N/A N/A N/A N/A N/A 40.760±0.00 62.161±32.76 N/A
ENSMUST00000190759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191088 8.625±0.00 10.138±1.01 N/A N/A 12.886±0.00 11.320±3.38 1.930±0.00 3.877±0.83 5.741±3.43 8.131±2.62 N/A 16.360±8.23 N/A 11.436±2.17
ENSMUST00000191142 0.530±0.34 0.379±0.09 0.817±0.00 1.938±0.68 0.316±0.05 N/A 0.146±0.03 0.188±0.05 0.990±0.93 0.338±0.06 0.424±0.07 1.046±0.44 1.331±0.12 0.399±0.07
ENSMUSG00000026021 ENSMUST00000091374 14.211±1.55 8.629±2.59 60.045±1.53 45.798±15.68 11.836±1.43 9.608±1.79 13.044±1.10 17.320±3.14 26.031±19.59 16.786±1.56 34.161±2.49 18.431±20.81 43.269±10.27 29.413±4.56
ENSMUST00000123857 N/A 3.074±0.00 N/A N/A N/A 6.860±1.53 N/A N/A 1.628±0.00 N/A N/A N/A N/A N/A
ENSMUST00000185265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047361 ENSMUST00000114243 N/A 0.202±0.07 4.854±0.49 N/A N/A N/A N/A N/A N/A 0.701±0.09 N/A 2.361±2.78 N/A 6.490±0.53
ENSMUST00000185291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101400 ENSMUST00000185710 0.262±0.06 N/A 0.289±0.00 0.073±0.00 N/A N/A 0.148±0.00 0.142±0.00 0.641±0.42 N/A 0.233±0.04 0.372±0.17 0.276±0.19 0.280±0.18

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