C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ubiquitin-like modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409368 SUMO1-002 ENSG00000116030 9606 - 2:202206650-202238594 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409368
Transcript ID Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409368 10.852±0.00 15.843±0.00 7.149±0.00 12.340±0.00 3.143±0.00 15.921±0.00 3.077±0.38 106.831±0.00 52.100±0.00 33.689±19.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020U CIL_00020U_0001 CGP 2:202073255-202238608
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0031965 IDA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091374 Sumo1-001 protein_coding Mus_musculus 0 667
ENSMUST00000123857 Sumo1-002 retained_intron Mus_musculus 0 407
ENSMUST00000120455 Gm14269-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000185265 Sumo1-004 protein_coding Mus_musculus 0 335
ENSMUST00000191158 Sumo1-003 processed_transcript Mus_musculus 0 228

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