C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ubiquitin-like modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392245 SUMO1-201 ENSG00000116030 9606 - 2:202206187-202238599 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020U CIL_00020U_0001 CGP 2:202073255-202238608
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005643 TAS nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006281 TAS DNA repair
GO:0016605 IDA PML body
GO:0016925 IDA protein sumoylation
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031334 IDA positive regulation of protein complex assembly
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031965 IDA nuclear membrane
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880 TAS regulation of protein localization
GO:0043392 IMP negative regulation of DNA binding
GO:0043433 IMP negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0060021 ISS palate development
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060334 TAS regulation of interferon-gamma-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091374 Sumo1-001 protein_coding Mus_musculus 0 638
ENSMUST00000120455 Gm14269-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000123857 Sumo1-002 retained_intron Mus_musculus 0 412
ENSMUST00000185265 Sumo1-004 protein_coding Mus_musculus 0 237
ENSMUST00000191158 Sumo1-003 processed_transcript Mus_musculus 0 228

Loading