C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ubiquitin-like modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392244 SUMO1-007 ENSG00000116030 9606 - 2:202206768-202238566 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000392244
Transcript ID Adipose Adrenal Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000392244 18.447±0.00 15.250±0.00 16.784±0.00 7.824±0.00 15.001±0.00 11.722±0.00 5.205±0.00 32.082±0.00 26.070±0.00 18.597±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020U CIL_00020U_0001 CGP 2:202073255-202238608
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005643 TAS nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006281 TAS DNA repair
GO:0016605 IDA PML body
GO:0016925 IDA protein sumoylation
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031334 IDA positive regulation of protein complex assembly
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031965 IDA nuclear membrane
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880 TAS regulation of protein localization
GO:0043392 IMP negative regulation of DNA binding
GO:0043433 IMP negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0060021 ISS palate development
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060334 TAS regulation of interferon-gamma-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091374 Sumo1-001 protein_coding Mus_musculus 0 865
ENSMUST00000185265 Sumo1-004 protein_coding Mus_musculus 0 460
ENSMUST00000120455 Gm14269-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000123857 Sumo1-002 retained_intron Mus_musculus 1e-31 141

Loading