C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FCF1 rRNA-processing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341162 FCF1-001 ENSG00000119616 9606 + 14:74713144-74738620 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000341162
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000341162 0.120±0.00 0.254±0.00 1.163±0.00 4.093±0.00 1.603±1.29 3.013±0.00 1.739±0.00 0.870±0.76 2.960±1.60 2.710±0.71 1.626±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AZ CIL_0005AZ_0001 CGP 14:74653437-74738620
CIL_0005AX CIL_0005AX_0001 CGP 14:74713144-74859435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0032040 IEA small-subunit processome
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021669 Fcf1-001 protein_coding Mus_musculus 0 806
ENSMUST00000171040 Fcf1-002 protein_coding Mus_musculus 0 771
ENSMUST00000117230 Gm11221-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000172241 Fcf1-003 retained_intron Mus_musculus 0 303

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