C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FCF1 rRNA-processing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556814 FCF1-006 ENSG00000119616 9606 + 14:74713168-74734917 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000556814
Transcript ID Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000556814 0.645±0.00 1.766±0.00 3.254±0.00 1.577±0.00 1.934±0.00 1.754±0.00 2.420±0.00 3.600±1.52 7.206±0.00 2.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AZ CIL_0005AZ_0001 CGP 14:74653437-74738620
CIL_0005AX CIL_0005AX_0001 CGP 14:74713144-74859435

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171040 Fcf1-002 protein_coding Mus_musculus 0 525
ENSMUST00000021669 Fcf1-001 protein_coding Mus_musculus 0 525
ENSMUST00000117230 Gm11221-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000172241 Fcf1-003 retained_intron Mus_musculus 0 265

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