C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FCF1 rRNA-processing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553615 FCF1-003 ENSG00000119616 9606 + 14:74713170-74735304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000553615
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000553615 8.021±0.00 5.307±0.00 0.775±0.00 5.797±0.00 10.314±0.00 8.094±0.00 1.390±0.57 3.240±2.38 2.738±0.00 3.909±0.00 2.807±0.00 5.090±2.73 4.679±1.17 5.484±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AZ CIL_0005AZ_0001 CGP 14:74653437-74738620
CIL_0005AX CIL_0005AX_0001 CGP 14:74713144-74859435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0032040 IEA small-subunit processome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171040 Fcf1-002 protein_coding Mus_musculus 0 688
ENSMUST00000021669 Fcf1-001 protein_coding Mus_musculus 0 688
ENSMUST00000117230 Gm11221-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000172241 Fcf1-003 retained_intron Mus_musculus 0 303

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