C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005LW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000028476-ENSDARG00000012990 CGP 7955 5:245831-282822
GeneTranscriptPositionBiotype
ENSDARG00000012990 (HOOK3)
hook microtubule-tethering protein 3 		ENSDART00000031970 (HOOK3-201) 273454-282822 protein_coding
ENSDARG00000028476 (rnf170)
ring finger protein 170 		ENSDART00000039055 (rnf170-201) 245831-250459 protein_coding
ENSDART00000125956 (rnf170-202) 245831-249550 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005LW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120925-ENSG00000168172 CGP 9606 8:42849637-43030539
GeneTranscriptPositionBiotype
ENSG00000120925 (RNF170)
ring finger protein 170 		ENST00000240159 (RNF170-004) 42855248-42896655 nonsense_mediated_decay
ENST00000319073 (RNF170-201) 42855709-42896588 protein_coding
ENST00000319104 (RNF170-005) 42849637-42896585 protein_coding
ENST00000524954 (RNF170-006) 42887728-42897290 protein_coding
ENST00000526349 (RNF170-003) 42855707-42896706 protein_coding
ENST00000527424 (RNF170-001) 42853301-42896721 protein_coding
ENST00000528318 (RNF170-002) 42861330-42896723 retained_intron
ENST00000531440 (RNF170-007) 42865466-42896598 protein_coding
ENST00000534961 (RNF170-202) 42853297-42896723 protein_coding
ENSG00000168172 (HOOK3)
hook microtubule-tethering protein 3 		ENST00000307602 (HOOK3-001) 42896932-43030539 protein_coding
ENST00000524839 (HOOK3-004) 43000819-43013121 processed_transcript
ENST00000526882 (HOOK3-003) 42974117-43010348 nonsense_mediated_decay
ENST00000527306 (HOOK3-002) 42896946-42998156 retained_intron
ENST00000533338 (HOOK3-006) 43018405-43028112 protein_coding
ENST00000533539 (HOOK3-005) 42997590-43018392 protein_coding
ENSG00000202514 (Y_RNA)
Y RNA 		ENST00000365644 (Y_RNA.1-579) 42949388-42949495 misc_RNA
ENSG00000242719 (RN7SL806P)
RNA, 7SL, cytoplasmic 806, pseudogene 		ENST00000467399 (RN7SL806P-201) 42881236-42881517 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005LW_0001ENSDARG00000012990ENSDART00000031970ENSDARG00000028476ENSDART00000039055ENSDART00000125956CIL_0005LW_0002ENSG00000120925ENST00000240159ENST00000319073ENST00000319104ENST00000524954ENST00000526349ENST00000527424ENST00000528318ENST00000531440ENST00000534961ENSG00000168172ENST00000307602ENST00000524839ENST00000526882ENST00000527306ENST00000533338ENST00000533539ENSG00000202514ENST00000365644ENSG00000242719ENST00000467399
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005LW_0001ENSDARG00000012990ENSDART00000031970ENSDARG00000028476ENSDART00000039055ENSDART00000125956CIL_0005LW_0002ENSG00000120925ENST00000240159ENST00000319073ENST00000526349ENST00000527424ENST00000528318ENST00000534961ENSG00000168172ENST00000307602ENST00000527306ENSG00000202514ENST00000365644ENSG00000242719ENST00000467399
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012990 ENSDART00000031970 N/A N/A N/A 0.402±0.00 N/A N/A 5.998±2.08 N/A 0.711±0.00 N/A N/A N/A N/A N/A
ENSDARG00000028476 ENSDART00000039055 N/A N/A N/A 6.675±4.60 N/A N/A 24.002±9.50 5.260±3.27 2.015±0.00 N/A 30.185±0.00 N/A N/A N/A
ENSDART00000125956 N/A N/A N/A N/A N/A N/A 0.610±0.00 0.608±0.00 0.927±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120925 ENST00000240159 N/A N/A N/A N/A 0.923±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000319073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.604±0.00 N/A
ENST00000319104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526349 N/A N/A N/A N/A N/A N/A 0.578±0.00 N/A N/A 0.537±0.00 N/A 11.761±0.00 15.372±0.00 5.498±0.00
ENST00000527424 3.582±0.00 N/A 0.363±0.00 3.438±0.36 1.584±0.69 1.469±0.00 0.701±0.26 2.386±0.03 1.434±0.38 0.953±0.00 1.163±0.19 2.869±0.86 3.767±0.62 2.089±0.58
ENST00000528318 N/A N/A 1.756±0.00 N/A 1.339±0.00 1.938±0.00 0.988±0.00 N/A 1.793±0.00 N/A N/A N/A N/A N/A
ENST00000531440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534961 N/A N/A N/A 1.400±0.00 N/A 0.395±0.00 1.068±0.00 1.875±0.00 N/A 0.542±0.32 N/A N/A 1.028±0.00 0.801±0.00
ENSG00000168172 ENST00000307602 8.648±0.00 3.206±0.00 N/A 1.217±0.00 4.701±0.34 3.254±0.86 2.052±0.77 1.917±0.02 3.611±2.47 5.040±0.46 1.900±0.33 3.951±1.57 1.822±0.51 2.904±0.71
ENST00000524839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527306 N/A N/A N/A 7.331±0.00 N/A N/A N/A N/A N/A 9.607±0.00 N/A N/A N/A N/A
ENST00000533338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202514 ENST00000365644 N/A 0.519±0.00 N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A 0.657±0.00 N/A N/A
ENSG00000242719 ENST00000467399 N/A 0.643±0.00 N/A 0.064±0.00 N/A N/A 0.055±0.00 N/A N/A 0.168±0.00 N/A 0.385±0.00 N/A 0.545±0.00

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