C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000483765 RPL21-008 ENSG00000122026 9606 + 13:27253765-27256545 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungENST00000483765
Transcript ID Brain Lung
ENST00000483765 41.716±0.00 38.691±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GA CIL_0000GA_0002 CGP 13:27066142-27256691
CIL_0004MI CIL_0004MI_0001 CGP 13:27251309-27273690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 285
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 211
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 2e-27 126
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 2e-27 126
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 2e-27 126
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 2e-27 126
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 2e-27 126
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 8e-26 121
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 4e-24 115
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 4e-24 115
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 4e-24 115
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 5e-23 111
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 5e-23 111
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 2e-22 110
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 2e-21 106
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 8e-21 104
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 8e-21 104
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 3e-20 102
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 4e-19 99
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 4e-19 99
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 1e-18 97
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 5e-18 95
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0.00000000000004 82

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