C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272274 RPL21-003 ENSG00000122026 9606 + 13:27251579-27256568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000272274
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000272274 28.168±0.00 88.975±0.00 135.046±0.00 112.676±0.00 47.738±0.71 54.318±23.56 83.698±51.88 91.657±0.00 95.266±0.00 481.038±434.71 502.767±98.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GA CIL_0000GA_0002 CGP 13:27066142-27256691
CIL_0004MI CIL_0004MI_0001 CGP 13:27251309-27273690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 627
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 627
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 627
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 582
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 577
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 566
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 560
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 558
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 555
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 555
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 544
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 520
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 459
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 449
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 398
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 337
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 281
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 272
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 0 219
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 9.80909e-45 183
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 1e-34 150
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 2e-28 130

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