C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: staufen double-stranded RNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124214 STAU1 9606 - 20:49113339-49188367 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340954 STAU1-004 49113523-49188367 protein_coding
  ENST00000347458 STAU1-003 49113523-49188367 protein_coding
  ENST00000360426 STAU1-002 49113523-49188367 protein_coding
  ENST00000371792 STAU1-007 49113523-49188367 protein_coding
  ENST00000371802 STAU1-006 49113523-49188367 protein_coding
  ENST00000371828 STAU1-201 49113341-49188367 protein_coding
  ENST00000371856 STAU1-001 49113339-49188367 protein_coding
  ENST00000437404 STAU1-005 49124375-49188367 protein_coding
  ENST00000456866 STAU1-008 49151582-49174263 protein_coding
  ENST00000614381 STAU1-202 49113341-49154068 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340954ENST00000347458ENST00000360426ENST00000371792ENST00000371802ENST00000371828ENST00000371856ENST00000614381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340954 N/A N/A N/A N/A N/A 1.576±0.00 N/A N/A N/A N/A N/A N/A 4.589±0.00 4.363±0.00
ENST00000347458 19.066±0.00 9.421±0.00 1.791±0.00 11.044±0.00 15.807±0.00 N/A N/A 9.489±0.00 10.688±0.00 11.351±0.00 N/A 8.493±0.00 N/A 5.736±0.00
ENST00000360426 13.290±0.00 6.205±0.00 N/A 8.726±0.00 N/A 15.226±0.00 4.459±3.48 7.099±2.17 5.185±2.42 5.750±3.63 6.486±4.70 8.729±5.41 14.302±2.39 10.822±0.01
ENST00000371792 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.604±0.00 0.832±0.00 3.224±0.00 N/A N/A
ENST00000371802 N/A N/A N/A N/A N/A 5.428±3.35 6.036±0.00 N/A N/A N/A N/A N/A N/A 6.899±0.00
ENST00000371828 9.959±0.00 5.350±0.00 1.456±0.00 3.087±1.38 5.774±0.00 N/A N/A N/A 4.919±0.00 6.763±0.00 N/A 7.616±2.58 6.363±0.22 N/A
ENST00000371856 N/A N/A 1.276±0.00 5.220±2.15 N/A 5.062±0.00 4.830±3.64 N/A N/A 2.730±1.53 5.885±0.00 N/A N/A 4.071±0.75
ENST00000614381 N/A 6.374±0.00 1.385±0.00 6.041±0.00 11.622±4.76 8.213±1.49 2.566±0.00 13.943±2.04 10.795±0.87 4.671±0.00 3.261±1.13 13.311±7.17 12.199±2.50 12.236±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0001 CGP 20:49046246-49188367
CIL_0001T2 CIL_0001T2_0001 CGP 20:49113339-49244077

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005791 TAS rough endoplasmic reticulum
GO:0005875 TAS microtubule associated complex
GO:0008157 IEA protein phosphatase 1 binding
GO:0008298 IEA intracellular mRNA localization
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0030425 IDA dendrite
GO:0030529 IEA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0044297 IDA cell body
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044182 stau1 staufen, RNA binding protein, homolog 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000039536 Stau1 staufen (RNA binding protein) homolog 1 (Drosophila) protein_coding Mus_musculus

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