C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: staufen double-stranded RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347458 STAU1-003 ENSG00000124214 9606 - 20:49113523-49188367 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungOvaryTestisENST00000347458
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Ovary Testis
ENST00000347458 19.066±0.00 9.421±0.00 1.791±0.00 11.044±0.00 15.807±0.00 9.489±0.00 10.688±0.00 11.351±0.00 8.493±0.00 5.736±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0001 CGP 20:49046246-49188367
CIL_0001T2 CIL_0001T2_0001 CGP 20:49113339-49244077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005791 TAS rough endoplasmic reticulum
GO:0005875 TAS microtubule associated complex
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0030425 IDA dendrite
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044297 IDA cell body
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109235 Stau1-001 protein_coding Mus_musculus 0 2025
ENSMUST00000109236 Stau1-002 protein_coding Mus_musculus 0 2002
ENSMUST00000109238 Stau1-003 protein_coding Mus_musculus 0 1932
ENSMUST00000049412 Stau1-005 protein_coding Mus_musculus 0 1753
ENSMUST00000184390 Stau1-004 nonsense_mediated_decay Mus_musculus 0 1099
ENSMUST00000142481 Stau1-006 retained_intron Mus_musculus 0 989
ENSMUST00000149454 Stau1-008 retained_intron Mus_musculus 0 883
ENSMUST00000154506 Stau1-010 retained_intron Mus_musculus 0 632
ENSMUST00000130790 Stau1-011 retained_intron Mus_musculus 0 414
ENSMUST00000134664 Stau1-009 retained_intron Mus_musculus 0 285

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