C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: staufen (RNA binding protein) homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039536 Stau1 10090 - 2:166947549-166996299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049412 Stau1-005 166948147-166996103 protein_coding
  ENSMUST00000109235 Stau1-001 166947549-166996278 protein_coding
  ENSMUST00000109236 Stau1-002 166948273-166996299 protein_coding
  ENSMUST00000109238 Stau1-003 166948147-166996265 protein_coding
  ENSMUST00000130104 Stau1-007 166963507-166976771 processed_transcript
  ENSMUST00000130790 Stau1-011 166952907-166963441 retained_intron
  ENSMUST00000134664 Stau1-009 166949694-166950956 retained_intron
  ENSMUST00000142481 Stau1-006 166948147-166955384 retained_intron
  ENSMUST00000149454 Stau1-008 166949246-166951231 retained_intron
  ENSMUST00000154506 Stau1-010 166952304-166960322 retained_intron
  ENSMUST00000184390 Stau1-004 166949292-166964716 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049412ENSMUST00000109235ENSMUST00000109236ENSMUST00000109238ENSMUST00000130790ENSMUST00000142481ENSMUST00000149454ENSMUST00000184390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.250±0.06 8.692±0.13 9.364±4.03 N/A
ENSMUST00000109235 1.891±0.32 N/A 4.090±0.16 7.834±0.59 1.943±0.31 2.006±0.19 1.928±0.10 2.309±0.60 2.286±0.49 1.910±0.04 2.692±0.78 4.368±1.88 5.062±1.25 1.221±0.22
ENSMUST00000109236 4.799±0.85 19.108±7.49 4.082±0.72 8.468±5.04 5.770±1.29 6.158±2.19 2.767±1.04 5.823±0.65 4.722±1.95 4.323±1.18 2.983±0.77 7.789±3.23 17.594±12.24 4.873±1.70
ENSMUST00000109238 4.982±0.23 8.966±0.00 8.643±0.16 9.306±0.72 2.646±0.00 3.369±0.17 2.429±0.45 3.143±0.77 4.423±1.33 3.590±0.82 4.636±0.40 6.457±3.33 14.449±5.52 2.544±0.24
ENSMUST00000130790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 79.008±0.00 15.299±0.00
ENSMUST00000142481 2.447±1.15 N/A 2.874±0.37 5.350±0.03 2.360±0.25 1.958±0.23 1.284±0.13 1.424±0.04 2.007±0.37 2.312±0.21 N/A 3.405±0.90 2.843±0.09 1.549±0.09
ENSMUST00000149454 7.299±0.42 N/A N/A N/A 7.161±0.00 N/A N/A N/A N/A N/A N/A 8.926±1.31 N/A N/A
ENSMUST00000184390 N/A N/A N/A 11.268±0.00 N/A N/A N/A N/A N/A N/A N/A 18.291±0.00 N/A 6.555±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0002 CGP 2:166906040-166996299
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0008157 IEA protein phosphatase 1 binding
GO:0008298 IDA intracellular mRNA localization
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0030425 IEA dendrite
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0044297 IEA cell body
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044182 stau1 staufen, RNA binding protein, homolog 1 (Drosophila) protein_coding Danio_rerio
ENSG00000124214 STAU1 staufen double-stranded RNA binding protein 1 protein_coding Homo_sapiens

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