C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase type 13A4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127249 ATP13A4 9606 - 3:193402077-193593111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295548 ATP13A4-009 193458598-193554799 protein_coding
  ENST00000342695 ATP13A4-003 193402358-193555122 protein_coding
  ENST00000392443 ATP13A4-007 193402358-193554987 protein_coding
  ENST00000400270 ATP13A4-010 193402077-193418983 protein_coding
  ENST00000428352 ATP13A4-001 193402078-193467348 nonsense_mediated_decay
  ENST00000437904 ATP13A4-011 193438494-193442552 nonsense_mediated_decay
  ENST00000450950 ATP13A4-004 193402350-193554869 nonsense_mediated_decay
  ENST00000474776 ATP13A4-005 193433860-193439095 retained_intron
  ENST00000482964 ATP13A4-006 193402500-193412371 processed_transcript
  ENST00000489140 ATP13A4-008 193502545-193593111 processed_transcript
  ENST00000490925 ATP13A4-002 193440115-193554907 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000295548ENST00000342695ENST00000392443ENST00000400270ENST00000428352ENST00000437904ENST00000450950ENST00000482964ENST00000489140ENST00000490925
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000295548 N/A N/A N/A N/A 0.416±0.00 0.050±0.00 N/A N/A N/A N/A N/A N/A
ENST00000342695 N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392443 N/A N/A 1.736±0.00 N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A
ENST00000400270 N/A N/A N/A N/A 0.048±0.00 0.017±0.00 N/A 0.118±0.00 4.772±0.00 N/A 0.054±0.00 0.235±0.00
ENST00000428352 N/A 0.225±0.00 N/A 0.236±0.00 0.430±0.38 N/A 0.176±0.00 0.048±0.00 N/A 0.237±0.11 0.046±0.00 0.102±0.00
ENST00000437904 N/A N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A
ENST00000450950 N/A N/A N/A N/A N/A N/A N/A N/A 5.007±0.00 0.091±0.00 N/A N/A
ENST00000482964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00
ENST00000489140 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490925 N/A N/A 3.038±0.00 0.506±0.00 0.439±0.00 N/A 0.140±0.00 0.052±0.00 16.079±0.00 0.371±0.13 0.047±0.00 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N5 CIL_0000N5_0001 CGP 3:193274790-193593111
CIL_0000N8 CIL_0000N8_0001 CGP 3:193402077-193697823

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006200 IEA ATP catabolic process
GO:0006812 IEA cation transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0019829 IEA cation-transporting ATPase activity
GO:0046872 IEA metal ion binding
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043018 CU694233.1 ATPase type 13A4 protein_coding Danio_rerio
ENSMUSG00000038094 Atp13a4 ATPase type 13A4 protein_coding Mus_musculus

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