C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase type 13A4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038094 Atp13a4 10090 - 16:29395853-29544864 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039090 Atp13a4-003 29420745-29544864 protein_coding
  ENSMUST00000057018 Atp13a4-006 29396041-29541483 protein_coding
  ENSMUST00000182013 Atp13a4-002 29396091-29544864 nonsense_mediated_decay
  ENSMUST00000182094 Atp13a4-011 29396417-29407638 retained_intron
  ENSMUST00000182168 Atp13a4-010 29420736-29441160 nonsense_mediated_decay
  ENSMUST00000182357 Atp13a4-008 29408668-29440123 retained_intron
  ENSMUST00000182573 Atp13a4-007 29395853-29456580 nonsense_mediated_decay
  ENSMUST00000182627 Atp13a4-001 29396028-29541597 protein_coding
  ENSMUST00000182676 Atp13a4-009 29396046-29408325 processed_transcript
  ENSMUST00000182694 Atp13a4-004 29540479-29544859 retained_intron
  ENSMUST00000182824 Atp13a4-005 29540426-29544798 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039090ENSMUST00000057018ENSMUST00000182013ENSMUST00000182094ENSMUST00000182357ENSMUST00000182573ENSMUST00000182627ENSMUST00000182676ENSMUST00000182824
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039090 0.011±0.00 N/A N/A 0.024±0.00 N/A N/A N/A 0.003±0.00 N/A N/A 0.132±0.00 0.018±0.00 N/A
ENSMUST00000057018 N/A N/A 0.345±0.24 N/A N/A N/A 0.268±0.02 N/A N/A N/A N/A N/A 0.366±0.21
ENSMUST00000182013 0.059±0.00 N/A N/A N/A 0.090±0.04 N/A 0.309±0.09 N/A 0.425±0.00 N/A 0.014±0.00 N/A 0.108±0.00
ENSMUST00000182094 0.161±0.00 0.086±0.00 N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A 4.779±0.00
ENSMUST00000182357 0.023±0.00 0.008±0.00 0.252±0.11 0.066±0.04 0.145±0.03 0.022±0.00 0.484±0.18 0.028±0.02 1.137±0.18 0.022±0.01 0.134±0.11 0.015±0.00 1.197±0.18
ENSMUST00000182573 0.051±0.00 N/A N/A N/A 0.041±0.00 N/A 0.094±0.00 N/A 0.499±0.16 N/A 0.088±0.00 0.010±0.00 1.002±0.00
ENSMUST00000182627 N/A N/A 0.726±0.00 N/A N/A N/A 0.224±0.06 N/A 0.653±0.24 N/A 0.044±0.00 N/A 0.584±0.08
ENSMUST00000182676 N/A N/A 1.006±0.00 0.119±0.07 N/A N/A N/A 0.014±0.01 N/A N/A 0.014±0.00 0.006±0.00 N/A
ENSMUST00000182824 N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N5 CIL_0000N5_0002 CGP 16:29231851-29544864
CIL_0000N8 CIL_0000N8_0002 CGP 16:29395853-29654884

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005388 IC calcium-transporting ATPase activity
GO:0005524 IEA ATP binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006200 IEA ATP catabolic process
GO:0006874 IDA cellular calcium ion homeostasis
GO:0016021 IEA integral component of membrane
GO:0046872 IEA metal ion binding
GO:0070588 IC calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043018 CU694233.1 ATPase type 13A4 protein_coding Danio_rerio
ENSG00000127249 ATP13A4 ATPase type 13A4 protein_coding Homo_sapiens

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