C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase type 13A4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428352 ATP13A4-001 ENSG00000127249 9606 - 3:193402078-193467348 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverOvaryPlacentaTestisENST00000428352
Transcript ID Bladder Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000428352 0.225±0.00 0.236±0.00 0.430±0.38 0.176±0.00 0.048±0.00 0.237±0.11 0.046±0.00 0.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N5 CIL_0000N5_0001 CGP 3:193274790-193593111
CIL_0000N8 CIL_0000N8_0001 CGP 3:193402077-193697823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0006812 IEA cation transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182573 Atp13a4-007 nonsense_mediated_decay Mus_musculus 0 2591
ENSMUST00000182013 Atp13a4-002 nonsense_mediated_decay Mus_musculus 0 1882
ENSMUST00000182627 Atp13a4-001 protein_coding Mus_musculus 0 1882
ENSMUST00000057018 Atp13a4-006 protein_coding Mus_musculus 0 1657
ENSMUST00000039090 Atp13a4-003 protein_coding Mus_musculus 0 1478
ENSMUST00000182357 Atp13a4-008 retained_intron Mus_musculus 0 953
ENSMUST00000143373 Atp13a5-003 protein_coding Mus_musculus 0 243
ENSMUST00000142681 Atp13a5-002 nonsense_mediated_decay Mus_musculus 0 243
ENSMUST00000075806 Atp13a5-001 protein_coding Mus_musculus 0 243

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