C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ATPase type 13A4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450950 ATP13A4-004 ENSG00000127249 9606 - 3:193402350-193554869 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryENST00000450950
Transcript ID Lung Ovary
ENST00000450950 5.007±0.00 0.091±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N5 CIL_0000N5_0001 CGP 3:193274790-193593111
CIL_0000N8 CIL_0000N8_0001 CGP 3:193402077-193697823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006200 IEA ATP catabolic process
GO:0006812 IEA cation transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182013 Atp13a4-002 nonsense_mediated_decay Mus_musculus 0 3452
ENSMUST00000182627 Atp13a4-001 protein_coding Mus_musculus 0 3009
ENSMUST00000057018 Atp13a4-006 protein_coding Mus_musculus 0 2418
ENSMUST00000182573 Atp13a4-007 nonsense_mediated_decay Mus_musculus 0 1881
ENSMUST00000039090 Atp13a4-003 protein_coding Mus_musculus 0 1844
ENSMUST00000182357 Atp13a4-008 retained_intron Mus_musculus 0 1399
ENSMUST00000143373 Atp13a5-003 protein_coding Mus_musculus 0 246
ENSMUST00000142681 Atp13a5-002 nonsense_mediated_decay Mus_musculus 0 246
ENSMUST00000075806 Atp13a5-001 protein_coding Mus_musculus 0 246

Loading