C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: S-antigen; retina and pineal gland (arrestin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130561 SAG 9606 + 2:233307816-233347055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000409110 SAG-001 233307821-233347055 protein_coding
  ENST00000412969 SAG-005 233307932-233347055 retained_intron
  ENST00000415974 SAG-008 233307885-233319004 protein_coding
  ENST00000447536 SAG-007 233307816-233327192 protein_coding
  ENST00000453143 SAG-016 233307974-233327176 nonsense_mediated_decay
  ENST00000461532 SAG-010 233319548-233320724 processed_transcript
  ENST00000462487 SAG-002 233307879-233322969 processed_transcript
  ENST00000469222 SAG-006 233327949-233346191 retained_intron
  ENST00000471884 SAG-004 233307880-233347054 retained_intron
  ENST00000473771 SAG-012 233334716-233340474 retained_intron
  ENST00000474206 SAG-009 233316090-233328613 processed_transcript
  ENST00000474220 SAG-013 233338526-233347055 retained_intron
  ENST00000476500 SAG-003 233307816-233347054 retained_intron
  ENST00000479450 SAG-014 233307884-233323004 processed_transcript
  ENST00000483231 SAG-011 233331523-233346412 retained_intron
  ENST00000492629 SAG-015 233343688-233347055 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409110ENST00000412969ENST00000469222ENST00000474206ENST00000474220ENST00000476500ENST00000492629
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.388±0.00
ENST00000412969 N/A N/A 0.039±0.00 N/A 0.081±0.00 N/A 0.060±0.00 0.020±0.00 0.119±0.09 0.051±0.02 0.031±0.02 0.029±0.00 N/A
ENST00000469222 0.102±0.00 0.216±0.00 0.242±0.00 0.132±0.00 0.067±0.00 0.042±0.00 0.190±0.00 0.029±0.00 0.062±0.00 0.044±0.00 0.018±0.01 N/A 0.379±0.18
ENST00000474206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A
ENST00000474220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 1.227±0.00
ENST00000476500 0.040±0.00 0.159±0.00 0.052±0.00 0.066±0.04 0.019±0.00 0.020±0.00 0.094±0.00 0.064±0.00 0.024±0.00 0.007±0.00 0.012±0.00 0.007±0.00 0.133±0.00
ENST00000492629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.294±0.24 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L2 CIL_0004L2_0002 CGP 2:233210051-233347055
CIL_0003RA CIL_0003RA_0001 CGP 2:233307816-233472104

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0001917 IEA photoreceptor inner segment
GO:0002046 IEA opsin binding
GO:0004864 TAS protein phosphatase inhibitor activity
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007166 TAS cell surface receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0043086 TAS negative regulation of catalytic activity
GO:0051219 IEA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012610 saga S-antigen; retina and pineal gland (arrestin) a protein_coding Danio_rerio
ENSDARG00000038378 sagb S-antigen; retina and pineal gland (arrestin) b protein_coding Danio_rerio
ENSMUSG00000056055 Sag S-antigen, retina and pineal gland (arrestin) protein_coding Mus_musculus

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