C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-antigen; retina and pineal gland (arrestin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412969 SAG-005 ENSG00000130561 9606 + 2:233307932-233347055 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungMuscleOvaryPlacentaENST00000412969
Transcript ID Brain Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000412969 0.039±0.00 0.081±0.00 0.060±0.00 0.020±0.00 0.119±0.09 0.051±0.02 0.031±0.02 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L2 CIL_0004L2_0002 CGP 2:233210051-233347055
CIL_0003RA CIL_0003RA_0001 CGP 2:233307816-233472104

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077772 Sag-001 protein_coding Mus_musculus 0 761
ENSMUST00000177757 Sag-201 protein_coding Mus_musculus 0 749
ENSMUST00000155393 Sag-004 retained_intron Mus_musculus 0 582
ENSMUST00000128761 Sag-003 retained_intron Mus_musculus 0 483
ENSMUST00000130886 Sag-002 retained_intron Mus_musculus 0 248
ENSMUST00000136708 Sag-007 processed_transcript Mus_musculus 0 217
ENSMUST00000144334 Sag-008 processed_transcript Mus_musculus 0 211
ENSMUST00000156381 Sag-006 retained_intron Mus_musculus 0.00000000004 75

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