C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-antigen; retina and pineal gland (arrestin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409110 SAG-001 ENSG00000130561 9606 + 2:233307821-233347055 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000409110
Transcript ID Testis
ENST00000409110 4.388±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L2 CIL_0004L2_0002 CGP 2:233210051-233347055
CIL_0003RA CIL_0003RA_0001 CGP 2:233307816-233472104

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0001917 IEA photoreceptor inner segment
GO:0002046 IEA opsin binding
GO:0004864 TAS protein phosphatase inhibitor activity
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007166 TAS cell surface receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0043086 TAS negative regulation of catalytic activity
GO:0051219 IEA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077772 Sag-001 protein_coding Mus_musculus 0 1290
ENSMUST00000177757 Sag-201 protein_coding Mus_musculus 0 1277
ENSMUST00000155393 Sag-004 retained_intron Mus_musculus 0 1110
ENSMUST00000128761 Sag-003 retained_intron Mus_musculus 0 1011
ENSMUST00000130886 Sag-002 retained_intron Mus_musculus 0 776
ENSMUST00000144334 Sag-008 processed_transcript Mus_musculus 0 617
ENSMUST00000156381 Sag-006 retained_intron Mus_musculus 0 448
ENSMUST00000136708 Sag-007 processed_transcript Mus_musculus 0 305

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