C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: S-antigen, retina and pineal gland (arrestin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056055 Sag 10090 + 1:87803680-87845158 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077772 Sag-001 87803680-87845158 protein_coding
  ENSMUST00000128761 Sag-003 87803680-87835396 retained_intron
  ENSMUST00000130886 Sag-002 87803680-87825300 retained_intron
  ENSMUST00000136708 Sag-007 87820707-87824469 processed_transcript
  ENSMUST00000144334 Sag-008 87812164-87824459 processed_transcript
  ENSMUST00000145385 Sag-005 87826488-87835414 retained_intron
  ENSMUST00000155393 Sag-004 87803680-87834910 retained_intron
  ENSMUST00000156381 Sag-006 87803680-87817863 retained_intron
  ENSMUST00000177757 Sag-201 87803680-87845023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000077772ENSMUST00000128761ENSMUST00000130886ENSMUST00000136708ENSMUST00000144334ENSMUST00000145385ENSMUST00000155393ENSMUST00000177757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000077772 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A 0.063±0.00 N/A 0.057±0.01 0.460±0.00 N/A
ENSMUST00000128761 0.290±0.00 0.202±0.06 N/A 0.133±0.00 0.132±0.08 0.184±0.01 0.132±0.04 0.217±0.00 0.094±0.04 0.248±0.06 0.051±0.03 0.235±0.08 0.059±0.00
ENSMUST00000130886 N/A 0.136±0.03 0.181±0.00 0.448±0.00 0.129±0.05 0.059±0.00 0.093±0.00 0.116±0.00 0.167±0.14 N/A 0.069±0.04 0.322±0.19 0.348±0.16
ENSMUST00000136708 N/A N/A N/A 1.161±0.00 N/A 0.176±0.00 0.090±0.00 N/A N/A N/A 0.089±0.00 0.346±0.00 0.488±0.00
ENSMUST00000144334 N/A 0.302±0.00 N/A N/A 0.089±0.00 N/A N/A N/A N/A 0.231±0.00 0.116±0.00 N/A N/A
ENSMUST00000145385 N/A 0.185±0.05 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155393 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A
ENSMUST00000177757 N/A 0.417±0.14 N/A N/A 0.142±0.01 N/A N/A N/A N/A N/A 0.041±0.00 0.169±0.07 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L2 CIL_0004L2_0003 CGP 1:87755870-87845158
CIL_0003RA CIL_0003RA_0002 CGP 1:87803680-87945180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0001917 IDA photoreceptor inner segment
GO:0002046 IDA opsin binding
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0030507 ISO spectrin binding
GO:0051219 IDA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012610 saga S-antigen; retina and pineal gland (arrestin) a protein_coding Danio_rerio
ENSDARG00000038378 sagb S-antigen; retina and pineal gland (arrestin) b protein_coding Danio_rerio
ENSG00000130561 SAG S-antigen; retina and pineal gland (arrestin) protein_coding Homo_sapiens

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