C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H3 histone, family 3B (H3.3B)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132475 H3F3B 9606 - 17:75776434-75785893 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254810 H3F3B-001 75776434-75779779 protein_coding
  ENST00000586270 H3F3B-006 75778610-75779603 protein_coding
  ENST00000586518 H3F3B-012 75778072-75779772 retained_intron
  ENST00000586607 H3F3B-003 75778576-75785486 protein_coding
  ENST00000587171 H3F3B-009 75778638-75779778 protein_coding
  ENST00000587560 H3F3B-007 75778567-75779286 protein_coding
  ENST00000589417 H3F3B-004 75778647-75779779 retained_intron
  ENST00000589599 H3F3B-005 75778574-75779780 protein_coding
  ENST00000589949 H3F3B-008 75778453-75779766 retained_intron
  ENST00000591890 H3F3B-011 75778325-75779759 protein_coding
  ENST00000591893 H3F3B-013 75783107-75785893 retained_intron
  ENST00000592643 H3F3B-010 75778250-75779758 protein_coding
  ENST00000593254 H3F3B-002 75778020-75779778 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254810ENST00000586270ENST00000586607ENST00000587171ENST00000589599ENST00000591890ENST00000592643ENST00000593254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254810 33.682±0.00 129.909±0.00 8.435±0.00 71.541±51.55 45.715±22.21 37.396±16.58 11.268±5.49 29.212±23.74 11.682±6.70 72.258±42.13 12.857±1.99 118.346±76.38 30.116±12.96 55.127±27.35
ENST00000586270 N/A N/A 97.947±0.00 134.111±0.00 199.734±0.00 202.769±0.00 50.696±0.00 121.948±0.00 179.935±0.00 112.090±0.00 156.804±0.00 381.073±0.00 211.435±2.94 N/A
ENST00000586607 N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.551±0.00 N/A N/A N/A N/A
ENST00000587171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 315.495±0.00
ENST00000589599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1162.310±0.00 N/A N/A
ENST00000591890 N/A N/A N/A N/A N/A N/A 31.393±0.00 N/A 23.601±0.00 N/A 27.185±0.00 111.835±0.00 N/A N/A
ENST00000592643 N/A N/A N/A N/A N/A 92.726±0.00 N/A N/A N/A N/A N/A N/A 76.321±8.58 210.679±0.00
ENST00000593254 N/A N/A 14.484±0.00 23.588±0.00 42.827±0.00 N/A N/A 66.560±0.00 32.242±0.00 31.129±0.00 14.802±0.00 251.486±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078Q CIL_00078Q_0001 CGP 17:75751594-75785893
CIL_00078R CIL_00078R_0001 CGP 17:75776434-75825799

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000786 IEA nucleosome
GO:0000788 IDA nuclear nucleosome
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0007596 TAS blood coagulation
GO:0030307 IMP positive regulation of cell growth
GO:0031492 IDA nucleosomal DNA binding
GO:0043234 IDA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020504 h3f3a H3 histone, family 3A protein_coding Danio_rerio
ENSMUSG00000016559 H3f3b H3 histone, family 3B protein_coding Mus_musculus

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