C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3B (H3.3B)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592643 H3F3B-010 ENSG00000132475 9606 - 17:75778250-75779758 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonPlacentaTestisENST00000592643
Transcript ID Colon Placenta Testis
ENST00000592643 92.726±0.00 76.321±8.58 210.679±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078Q CIL_00078Q_0001 CGP 17:75751594-75785893
CIL_00078R CIL_00078R_0001 CGP 17:75776434-75825799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016703 H3f3b-201 protein_coding Mus_musculus 0 767
ENSMUST00000106454 H3f3b-001 protein_coding Mus_musculus 0 767
ENSMUST00000139623 H3f3b-002 processed_transcript Mus_musculus 0 529
ENSMUST00000139378 H3f3b-003 processed_transcript Mus_musculus 0 296
ENSMUST00000160676 Gm6485-001 processed_pseudogene Mus_musculus 0 198
ENSDART00000157370 hist2h3c-001 protein_coding Danio_rerio 1e-30 137
ENSDART00000066545 h3f3a-202 protein_coding Danio_rerio 3e-27 126
ENSDART00000137017 h3f3a-001 protein_coding Danio_rerio 3e-27 126
ENSMUST00000122447 Gm12260-001 unprocessed_pseudogene Mus_musculus 1e-26 124

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