C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily M, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134160 TRPM1 9606 - 15:31001061-31161273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256552 TRPM1-004 31001334-31101721 protein_coding
  ENST00000397795 TRPM1-001 31001061-31101707 protein_coding
  ENST00000542188 TRPM1-201 31001061-31161273 protein_coding
  ENST00000557948 TRPM1-010 31028436-31033015 retained_intron
  ENST00000558070 TRPM1-009 31060465-31062751 retained_intron
  ENST00000558212 TRPM1-011 31026964-31031332 retained_intron
  ENST00000558445 TRPM1-008 31002464-31160954 protein_coding
  ENST00000558768 TRPM1-007 31001822-31068092 protein_coding
  ENST00000559177 TRPM1-002 31002464-31160954 protein_coding
  ENST00000559179 TRPM1-003 31069376-31101727 protein_coding
  ENST00000560658 TRPM1-005 31060235-31101706 nonsense_mediated_decay
  ENST00000560801 TRPM1-006 31001822-31068092 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartOvaryPlacentaENST00000256552ENST00000397795ENST00000557948ENST00000558070ENST00000558445ENST00000559179ENST00000560658ENST00000560801
Transcript ID Adipose Brain Breast Colon Heart Ovary Placenta
ENST00000256552 0.007±0.00 N/A 0.020±0.00 0.002±0.00 0.005±0.00 N/A 0.039±0.00
ENST00000397795 N/A 0.008±0.00 N/A N/A N/A 0.004±0.00 N/A
ENST00000557948 N/A 0.052±0.00 N/A N/A N/A N/A N/A
ENST00000558070 N/A N/A 0.052±0.00 0.083±0.00 N/A N/A 0.104±0.00
ENST00000558445 N/A N/A N/A N/A N/A N/A 0.022±0.00
ENST00000559179 N/A N/A N/A N/A N/A 0.016±0.00 N/A
ENST00000560658 0.028±0.00 N/A N/A N/A N/A 0.021±0.00 0.016±0.00
ENST00000560801 N/A N/A N/A N/A N/A N/A 0.058±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005261 IEA cation channel activity
GO:0005262 IDA calcium channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0007216 IEA:IMP G-protein coupled glutamate receptor signaling pathway
GO:0007601 IMP visual perception
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0035841 IEA new growing cell tip
GO:0046548 IEA retinal rod cell development
GO:0055085 TAS:IEA transmembrane transport
GO:0060402 IDA calcium ion transport into cytosol
GO:0070588 TAS calcium ion transmembrane transport
GO:0071482 IMP cellular response to light stimulus
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011259 trpm1a transient receptor potential cation channel, subfamily M, member 1a protein_coding Danio_rerio
ENSDARG00000061399 trpm1b transient receptor potential cation channel, subfamily M, member 1b protein_coding Danio_rerio
ENSMUSG00000030523 Trpm1 transient receptor potential cation channel, subfamily M, member 1 protein_coding Mus_musculus

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