C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily M, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030523 Trpm1 10090 + 7:64153835-64269775 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032737 Trpm1-008 64185555-64218735 protein_coding
  ENSMUST00000085222 Trpm1-003 64153835-64269775 protein_coding
  ENSMUST00000107515 Trpm1-009 64185584-64218735 protein_coding
  ENSMUST00000107516 Trpm1-007 64185550-64224764 retained_intron
  ENSMUST00000107519 Trpm1-005 64185552-64269757 protein_coding
  ENSMUST00000107525 Trpm1-001 64153845-64269132 protein_coding
  ENSMUST00000107527 Trpm1-004 64153928-64269132 protein_coding
  ENSMUST00000124597 Trpm1-017 64244811-64268140 retained_intron
  ENSMUST00000137650 Trpm1-014 64185553-64201969 protein_coding
  ENSMUST00000138074 Trpm1-012 64226581-64242578 retained_intron
  ENSMUST00000138609 Trpm1-015 64226948-64231280 processed_transcript
  ENSMUST00000140277 Trpm1-011 64210023-64220356 retained_intron
  ENSMUST00000141574 Trpm1-006 64185381-64211427 retained_intron
  ENSMUST00000144996 Trpm1-010 64185601-64201942 protein_coding
  ENSMUST00000146313 Trpm1-013 64185459-64199283 processed_transcript
  ENSMUST00000153421 Trpm1-002 64153845-64226739 nonsense_mediated_decay
  ENSMUST00000155787 Trpm1-016 64245024-64268020 processed_transcript
  ENSMUST00000176392 Trpm1-018 64203062-64210889 processed_transcript
  ENSMUST00000176548 Trpm1-022 64203062-64208329 processed_transcript
  ENSMUST00000176623 Trpm1-021 64210909-64223760 protein_coding
  ENSMUST00000177102 Trpm1-201 64185459-64224836 protein_coding
  ENSMUST00000177295 Trpm1-019 64199262-64202085 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032737ENSMUST00000085222ENSMUST00000107515ENSMUST00000107516ENSMUST00000107519ENSMUST00000107525ENSMUST00000107527ENSMUST00000124597ENSMUST00000137650ENSMUST00000138074ENSMUST00000138609ENSMUST00000141574ENSMUST00000144996ENSMUST00000177102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032737 N/A N/A N/A 0.055±0.02 0.253±0.17 N/A N/A N/A 0.091±0.07 N/A N/A 0.064±0.00 0.038±0.00 N/A
ENSMUST00000085222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A
ENSMUST00000107515 0.083±0.04 0.081±0.02 0.038±0.00 0.089±0.08 0.138±0.06 0.093±0.05 0.043±0.02 0.078±0.03 0.112±0.12 0.095±0.03 0.051±0.00 0.114±0.10 0.108±0.04 0.174±0.00
ENSMUST00000107516 N/A N/A N/A N/A 0.041±0.00 N/A 0.019±0.00 N/A N/A N/A 0.095±0.00 N/A 0.087±0.00 N/A
ENSMUST00000107519 0.028±0.00 N/A 0.006±0.00 0.020±0.00 0.019±0.00 N/A N/A 0.079±0.03 N/A 0.035±0.00 0.046±0.00 0.032±0.02 0.050±0.02 0.189±0.07
ENSMUST00000107525 0.013±0.00 N/A N/A N/A N/A N/A N/A 0.044±0.01 N/A 0.013±0.00 0.077±0.00 0.024±0.01 0.091±0.05 N/A
ENSMUST00000107527 N/A N/A 0.007±0.00 0.092±0.00 N/A 0.043±0.00 N/A 0.036±0.00 N/A 0.025±0.01 0.077±0.03 0.066±0.02 0.149±0.00 0.224±0.00
ENSMUST00000124597 N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A 0.028±0.00 0.125±0.00 0.127±0.05 0.232±0.10 0.134±0.00 N/A
ENSMUST00000137650 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A 0.108±0.00 N/A N/A
ENSMUST00000138074 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.021±0.00 N/A 0.046±0.02 N/A 0.173±0.02
ENSMUST00000138609 0.157±0.00 N/A N/A N/A N/A N/A N/A 0.729±0.00 N/A 0.234±0.13 N/A 0.276±0.00 N/A N/A
ENSMUST00000141574 N/A 0.036±0.00 N/A N/A 0.061±0.01 0.070±0.00 N/A N/A 0.042±0.03 N/A 0.036±0.00 N/A N/A N/A
ENSMUST00000144996 N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A
ENSMUST00000177102 N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.097±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081G CIL_00081G_0002 VISTA 7:63656077-64260826

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005261 IDA cation channel activity
GO:0005262 ISS calcium channel activity
GO:0005886 IEA plasma membrane
GO:0006812 IDA cation transport
GO:0007165 IGI signal transduction
GO:0007216 ISS G-protein coupled glutamate receptor signaling pathway
GO:0007601 IEA visual perception
GO:0016021 IEA integral component of membrane
GO:0035841 IDA new growing cell tip
GO:0046548 IMP retinal rod cell development
GO:0060402 ISS calcium ion transport into cytosol
GO:0070588 ISS calcium ion transmembrane transport
GO:0071482 IMP cellular response to light stimulus
GO:0098655 IDA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011259 trpm1a transient receptor potential cation channel, subfamily M, member 1a protein_coding Danio_rerio
ENSDARG00000061399 trpm1b transient receptor potential cation channel, subfamily M, member 1b protein_coding Danio_rerio
ENSG00000134160 TRPM1 transient receptor potential cation channel, subfamily M, member 1 protein_coding Homo_sapiens

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