C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542188 TRPM1-201 ENSG00000134160 9606 - 15:31001061-31161273 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005261 IEA cation channel activity
GO:0005262 IDA calcium channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0007216 IEA:IMP G-protein coupled glutamate receptor signaling pathway
GO:0007601 IMP visual perception
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0035841 IEA new growing cell tip
GO:0046548 IEA retinal rod cell development
GO:0055085 TAS:IEA transmembrane transport
GO:0060402 IDA calcium ion transport into cytosol
GO:0070588 TAS calcium ion transmembrane transport
GO:0071482 IMP cellular response to light stimulus
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085222 Trpm1-003 protein_coding Mus_musculus 0 4662
ENSMUST00000107519 Trpm1-005 protein_coding Mus_musculus 0 4599
ENSMUST00000107525 Trpm1-001 protein_coding Mus_musculus 0 4578
ENSMUST00000177102 Trpm1-201 protein_coding Mus_musculus 0 2019
ENSMUST00000107516 Trpm1-007 retained_intron Mus_musculus 0 2019
ENSMUST00000032737 Trpm1-008 protein_coding Mus_musculus 0 1624
ENSMUST00000153421 Trpm1-002 nonsense_mediated_decay Mus_musculus 0 1483
ENSMUST00000141574 Trpm1-006 retained_intron Mus_musculus 0 1417
ENSMUST00000107515 Trpm1-009 protein_coding Mus_musculus 0 1362
ENSDART00000123249 trpm1b-202 protein_coding Danio_rerio 0 955
ENSMUST00000107527 Trpm1-004 protein_coding Mus_musculus 0 880
ENSMUST00000124597 Trpm1-017 retained_intron Mus_musculus 0 800
ENSMUST00000138074 Trpm1-012 retained_intron Mus_musculus 0 754
ENSMUST00000155787 Trpm1-016 processed_transcript Mus_musculus 0 675
ENSMUST00000140277 Trpm1-011 retained_intron Mus_musculus 0 556
ENSMUST00000138609 Trpm1-015 processed_transcript Mus_musculus 0 353
ENSMUST00000176392 Trpm1-018 processed_transcript Mus_musculus 0 331
ENSMUST00000176623 Trpm1-021 protein_coding Mus_musculus 0 311

Loading