C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542188 TRPM1-201 ENSG00000134160 9606 - 15:31001061-31161273 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005261 IEA cation channel activity
GO:0005262 IDA calcium channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0007216 IEA:IMP G-protein coupled glutamate receptor signaling pathway
GO:0007601 IMP visual perception
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0035841 IEA new growing cell tip
GO:0046548 IEA retinal rod cell development
GO:0055085 TAS:IEA transmembrane transport
GO:0060402 IDA calcium ion transport into cytosol
GO:0070588 TAS calcium ion transmembrane transport
GO:0071482 IMP cellular response to light stimulus
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085222 Trpm1-003 protein_coding Mus_musculus 0 4662
ENSMUST00000107519 Trpm1-005 protein_coding Mus_musculus 0 4599
ENSMUST00000107525 Trpm1-001 protein_coding Mus_musculus 0 4578
ENSMUST00000177102 Trpm1-201 protein_coding Mus_musculus 0 2019
ENSMUST00000107516 Trpm1-007 retained_intron Mus_musculus 0 2019
ENSMUST00000032737 Trpm1-008 protein_coding Mus_musculus 0 1624
ENSMUST00000153421 Trpm1-002 nonsense_mediated_decay Mus_musculus 0 1483
ENSMUST00000141574 Trpm1-006 retained_intron Mus_musculus 0 1417
ENSMUST00000107515 Trpm1-009 protein_coding Mus_musculus 0 1362
ENSDART00000123249 trpm1b-202 protein_coding Danio_rerio 0 955
ENSMUST00000107527 Trpm1-004 protein_coding Mus_musculus 0 880
ENSMUST00000124597 Trpm1-017 retained_intron Mus_musculus 0 800
ENSMUST00000138074 Trpm1-012 retained_intron Mus_musculus 0 754
ENSMUST00000155787 Trpm1-016 processed_transcript Mus_musculus 0 675
ENSMUST00000140277 Trpm1-011 retained_intron Mus_musculus 0 556
ENSMUST00000138609 Trpm1-015 processed_transcript Mus_musculus 0 353
ENSMUST00000176392 Trpm1-018 processed_transcript Mus_musculus 0 331
ENSMUST00000176623 Trpm1-021 protein_coding Mus_musculus 0 311

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