C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripherin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451891 PRPH-002 ENSG00000135406 9606 + 12:49295362-49297238 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLiverMuscleTestisENST00000451891
Transcript ID Adipose Brain Breast Liver Muscle Testis
ENST00000451891 1.543±0.00 0.334±0.21 1.697±0.12 0.215±0.00 0.279±0.00 28.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0001 CGP 12:49188736-49298686
CIL_00009Q CIL_00009Q_0001 CGP 12:49293252-49331731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament
GO:0045098 IEA type III intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024249 Prph-201 protein_coding Mus_musculus 0 688
ENSMUST00000047104 Prph-202 protein_coding Mus_musculus 0 579
ENSDART00000121861 prph-201 protein_coding Danio_rerio 0 222
ENSDART00000154314 prph-001 protein_coding Danio_rerio 0 222

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